Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC61Q9Y6R9 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC61Q9Y6R9 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC61Q9Y6R9 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC61Q9Y6R9 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
CCDC61Q9Y6R9 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 U3.2-201ENST00000362981 210 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.569-201ENST00000384749 103 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-754P-201ENST00000391166 107 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AL160275.3-201ENST00000423876 471 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 PTGES3P4-201ENST00000426243 356 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC022022.1-201ENST00000430304 178 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 EZH2P1-201ENST00000431167 291 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC092573.2-201ENST00000434546 243 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 PPIAP13-201ENST00000434706 478 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 RNU7-87P-201ENST00000459343 62 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 HMGB1P21-201ENST00000502313 581 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-677P-201ENST00000516914 101 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 CYCSP26-201ENST00000534107 320 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 MIR4504-201ENST00000577413 92 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC024940.4-201ENST00000605507 246 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.778-201ENST00000620203 90 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 AC068870.2-201ENST00000620635 389 ntBASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
CCDC61Q9Y6R9 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 MIR765-201ENST00000390226 114 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 RNA5SP339-201ENST00000390987 122 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-1012P-201ENST00000516606 109 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AP000859.1-201ENST00000525536 307 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 MIR4659A-201ENST00000580269 81 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AC006329.2-201ENST00000611491 394 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 SNORD39.4-201ENST00000620099 78 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 MVP-219ENST00000629059 120 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 RNF145-206ENST00000519865 3478 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 AC009779.8-201ENST00000641684 4384 ntBASIC7.7□□□□□ -1.18
CCDC61Q9Y6R9 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-151P-201ENST00000364158 107 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.357-201ENST00000365487 109 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-1226P-201ENST00000384317 107 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 MIR521-1-201ENST00000384902 87 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.623-201ENST00000411128 95 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RN7SL447P-201ENST00000494711 245 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 RNU4ATAC15P-201ENST00000516415 126 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 FKBP1BP1-201ENST00000553366 325 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 MIR3613-201ENST00000579844 87 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 AL031601.2-202ENST00000622650 282 ntBASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC7.69□□□□□ -1.18
CCDC61Q9Y6R9 OFD1P17-201ENST00000437639 3018 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 SNORD1C-201ENST00000363315 78 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.262-201ENST00000364641 102 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.309-201ENST00000365046 111 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 SNORA70H-201ENST00000383910 135 ntBASIC7.68□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms