Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LINC01963-201ENST00000562038 3148 ntBASIC5.03□□□□□ -1.6
HIF3AQ9Y2N7 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HIF3AQ9Y2N7 SAMMSON-213ENST00000641336 1521 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SMG1P6-201ENST00000532337 2930 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SNORD27-201ENST00000363981 72 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RNA5SP433-201ENST00000364491 114 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-214P-201ENST00000384130 107 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC097374.1-203ENST00000400783 485 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RPS3AP2-201ENST00000407190 754 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-293P-201ENST00000411259 106 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AL359672.1-201ENST00000442302 409 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AL162389.1-201ENST00000449233 177 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC245028.2-201ENST00000458673 253 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RPS23P6-201ENST00000466136 431 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC084198.1-201ENST00000477747 402 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC083829.1-201ENST00000503756 657 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SNORA25.11-201ENST00000515935 105 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SNORA70.11-201ENST00000515987 138 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SNORA70.13-201ENST00000516116 138 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SNORA40.15-201ENST00000516884 107 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 OR10G5P-201ENST00000532733 358 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SUB1P3-201ENST00000564581 315 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC092121.1-201ENST00000569452 202 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 MIR7853-201ENST00000584820 132 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AL499605.1-201ENST00000604628 403 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC010632.3-201ENST00000611377 369 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 U6.104-201ENST00000637979 90 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 ADAM24P-201ENST00000398655 2101 ntBASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HIF3AQ9Y2N7 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC138393.1-203ENST00000327086 343 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 MIR375-201ENST00000362103 64 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.19-201ENST00000362462 99 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.151-201ENST00000363566 112 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC019155.1-201ENST00000382242 574 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-190P-201ENST00000384154 102 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.462-201ENST00000384268 102 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 MIR517A-201ENST00000385001 87 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 MTCO3P19-201ENST00000415864 321 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC007161.1-204ENST00000423039 460 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AL132765.1-201ENST00000434165 553 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 RPS20P1-201ENST00000434853 354 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 RPL23AP33-201ENST00000442301 452 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AL392103.1-201ENST00000447000 198 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 GAPDHP27-201ENST00000447427 1020 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AL031274.1-201ENST00000450334 232 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 HMGB1P25-201ENST00000468402 607 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 AC091912.1-201ENST00000511351 248 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 RN7SKP82-201ENST00000516786 223 ntBASIC5.01□□□□□ -1.61
HIF3AQ9Y2N7 SNORA81.3-201ENST00000517283 198 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms