Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AMD1P1-201ENST00000457220 922 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 SNORD97-201ENST00000459187 142 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 RN7SL817P-201ENST00000480777 288 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC108022.1-201ENST00000493466 478 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC091885.1-201ENST00000506658 268 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC017037.2-201ENST00000513850 890 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 GLYCAM1-201ENST00000546596 285 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC123904.3-201ENST00000547218 814 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 GSTP1P1-201ENST00000548078 319 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 CR383656.7-201ENST00000548164 174 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 BNIP3P6-201ENST00000549284 499 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 ARL2BPP2-201ENST00000550907 489 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL110118.1-201ENST00000553543 400 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC068831.4-201ENST00000556118 109 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC091178.1-203ENST00000584586 279 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL669831.4-202ENST00000590817 238 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC025946.2-201ENST00000603398 234 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL353621.2-201ENST00000605340 133 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AP003117.2-201ENST00000606010 545 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 U73479.1-201ENST00000618062 168 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 MIR4275-201ENST00000636486 87 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 AC092435.4-201ENST00000623012 4159 ntBASIC4.12□□□□□ -1.75
VSX1Q9NZR4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.12□□□□□ -1.75
VSX1Q9NZR4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 MAPK10-263ENST00000641052 4307 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNU6-511P-201ENST00000363496 107 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNA5SP513-201ENST00000364648 118 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNU6-637P-201ENST00000384050 107 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNU6-510P-201ENST00000391239 108 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AL645927.1-201ENST00000396783 406 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 Z98745.1-201ENST00000402553 494 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNA5SP239-201ENST00000410218 129 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 OR1AA1P-201ENST00000419597 916 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 SRIP2-201ENST00000428470 166 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 LAMTOR3P1-201ENST00000428620 370 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RPL36AP53-201ENST00000432891 316 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC016831.4-201ENST00000438302 307 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AL121871.1-201ENST00000443413 436 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RNU7-182P-201ENST00000459009 62 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC006967.1-201ENST00000467608 589 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 HMGB1P25-201ENST00000468402 607 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RPS27AP1-201ENST00000475545 471 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 FGF7P4-201ENST00000509595 295 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 HIGD1AP3-201ENST00000515857 278 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC100870.1-201ENST00000522035 505 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 OR4R3P-201ENST00000525084 838 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 MIR3667-201ENST00000581025 74 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 VN1R80P-201ENST00000597126 338 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 TUG1_1.1-201ENST00000610654 145 ntBASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
VSX1Q9NZR4 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
VSX1Q9NZR4 AL391684.1-202ENST00000641293 1636 ntBASIC4.1□□□□□ -1.75
VSX1Q9NZR4 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.1□□□□□ -1.75
VSX1Q9NZR4 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
VSX1Q9NZR4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
VSX1Q9NZR4 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms