Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 FAM27E4-201ENST00000605259 342 ntBASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 MIR6793-201ENST00000612376 63 ntBASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 AC073136.1-201ENST00000449426 2884 ntBASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 AC027287.1-201ENST00000553115 1453 ntBASIC5.7□□□□□ -1.5
CUEDC1Q9NWM3 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 Y_RNA.471-201ENST00000384312 102 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MIR517A-201ENST00000385001 87 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MIR625-201ENST00000385047 85 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RPS12P5-201ENST00000423449 371 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 UBE2D3P2-201ENST00000424409 445 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 PPIAP3-201ENST00000450588 505 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 NDUFB4P10-201ENST00000452541 359 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RPL7P49-201ENST00000471402 708 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AC069499.1-201ENST00000489433 509 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RBBP4P6-201ENST00000508098 202 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RNU6-911P-201ENST00000516523 104 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RNU6-64P-201ENST00000517119 105 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AP002392.1-201ENST00000537692 208 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 SNORD95-201ENST00000579879 68 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AC093227.2-201ENST00000589357 285 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 SUMO2P15-201ENST00000604285 278 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AP001485.1-201ENST00000604799 199 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AC002044.1-201ENST00000606707 158 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AL136131.3-201ENST00000607600 188 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 AC006329.2-201ENST00000611491 394 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 RNA5SP440-201ENST00000612665 119 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MIR6719-201ENST00000622428 87 ntBASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
CUEDC1Q9NWM3 GABPAP-201ENST00000419271 1356 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC022893.2-201ENST00000564832 3296 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 XIAPP3-201ENST00000312918 795 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 RN7SKP128-201ENST00000364270 303 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 Y_RNA.269-201ENST00000364685 89 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 LINC00276-201ENST00000417751 596 ntTSL 2 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 BX323845.3-201ENST00000428215 527 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC073410.1-201ENST00000435125 589 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 RPS27AP1-201ENST00000475545 471 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 TOMM22P4-201ENST00000511318 336 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC139365.2-201ENST00000517972 253 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC092121.1-201ENST00000569452 202 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 MIR4489-201ENST00000578869 62 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AL451044.1-201ENST00000604867 238 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 AC006023.2-201ENST00000609916 167 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 Z73965.1-201ENST00000623412 2297 ntBASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CUEDC1Q9NWM3 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CUEDC1Q9NWM3 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.67□□□□□ -1.5
CUEDC1Q9NWM3 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CUEDC1Q9NWM3 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CUEDC1Q9NWM3 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms