Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL356432.3-201ENST00000568952 465 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 IPO5P1-202ENST00000600039 287 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AC068790.3-201ENST00000602988 553 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AL161729.3-201ENST00000603533 673 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AL358072.1-201ENST00000604156 575 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AC024940.4-201ENST00000605507 246 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AC090425.2-201ENST00000608818 501 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AC024941.1-201ENST00000612250 334 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AL158063.1-201ENST00000615349 536 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AL139089.1-201ENST00000620372 975 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 AC026422.1-201ENST00000623961 452 ntBASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CHMP1AQ9HD42 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC092326.2-201ENST00000624772 1561 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 MIR383-201ENST00000362257 73 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RNU1-132P-201ENST00000364300 164 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RNU4-40P-201ENST00000364351 143 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RNU4-65P-201ENST00000410473 140 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 UBE2D3P2-201ENST00000424409 445 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AL353777.1-201ENST00000425552 326 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 KCTD9P3-201ENST00000434597 1169 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 SETP5-201ENST00000437270 562 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 SKP1P1-201ENST00000438081 489 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RPL22P17-201ENST00000438729 315 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 CBX1P1-201ENST00000440184 427 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 ATP6V0E1P2-201ENST00000441771 245 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 USP9YP12-201ENST00000450481 570 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 DNAJC19P1-201ENST00000455312 319 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AL122001.1-201ENST00000457027 370 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RNA5SP246-201ENST00000458909 119 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RPL21P104-201ENST00000464143 478 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC068724.1-201ENST00000487100 792 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 RN7SL604P-201ENST00000492589 296 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 ENSA-210ENST00000503241 574 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC114967.1-201ENST00000504890 259 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 NPM1P41-201ENST00000512920 831 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC099522.1-202ENST00000514718 367 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 SNORA70.16-201ENST00000516390 95 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC022616.6-201ENST00000520479 119 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 IGHV3-76-201ENST00000522465 295 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 COX6CP3-201ENST00000580869 223 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC106900.2-201ENST00000604994 317 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC068276.1-201ENST00000605793 379 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC135507.1-201ENST00000607214 561 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC093783.1-201ENST00000612976 329 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC093838.1-201ENST00000613014 469 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC025594.3-201ENST00000613068 790 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 AC004696.1-201ENST00000614345 607 ntBASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.38□□□□□ -1.87
CHMP1AQ9HD42 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 AL672296.1-201ENST00000427780 2158 ntBASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 Y_RNA.77-201ENST00000362962 107 ntBASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 RNU6-432P-201ENST00000384196 109 ntBASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 SNORA36C-201ENST00000384289 132 ntBASIC3.37□□□□□ -1.87
CHMP1AQ9HD42 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.37□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms