Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NIPA2P2-201ENST00000496376 1083 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 SNORA19.2-201ENST00000516013 114 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 SOD1P3-201ENST00000518682 454 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 PDCD5P1-201ENST00000543528 309 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC008127.2-201ENST00000549925 1075 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MIR3167-201ENST00000579623 85 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AC007687.1-201ENST00000602704 304 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 OR10AB1P-201ENST00000609613 938 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 AL365204.3-201ENST00000612448 685 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MIR6075-201ENST00000620782 95 ntBASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC5.42□□□□□ -1.54
USHBP1Q8N6Y0 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC134882.1-201ENST00000603738 1676 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.419-201ENST00000384041 102 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 RN7SKP32-201ENST00000410167 303 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 MTCYBP6-201ENST00000441810 138 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 RPL7P12-201ENST00000446719 750 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL445433.1-201ENST00000457507 257 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC090453.1-201ENST00000495560 436 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC105029.1-201ENST00000520250 669 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 CYCSP28-201ENST00000534284 321 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 LLPHP1-201ENST00000603571 367 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AC244100.1-202ENST00000621554 382 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 MAPK10-303ENST00000641324 3959 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 AL049780.3-201ENST00000624612 1583 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 MAPK10-349ENST00000641767 3661 ntBASIC5.41□□□□□ -1.54
USHBP1Q8N6Y0 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 Y_RNA.381-201ENST00000365666 102 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 MIR30B-201ENST00000384850 88 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AL031679.1-201ENST00000400616 525 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AL122016.1-201ENST00000403365 367 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 BTBD10P2-201ENST00000404779 676 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 OR4F13P-201ENST00000428478 931 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 USP9YP15-201ENST00000442391 422 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC002381.1-201ENST00000447049 280 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC005229.2-201ENST00000456995 399 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC034222.1-201ENST00000494052 532 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 RNA5SP401-201ENST00000515920 127 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 RNU6-1045P-201ENST00000516321 107 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC090151.1-201ENST00000520784 730 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 CASP1-212ENST00000531166 300 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 NACA-211ENST00000548563 827 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AL355375.2-201ENST00000574825 175 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 BBIP1P1-201ENST00000602999 279 ntBASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 AC121334.2-201ENST00000605387 271 ntBASIC5.4□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms