Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RPL36AP51-201ENST00000487216 318 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA3P55318 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC1.77□□□□□ -2.13
FOXA3P55318 AC093770.1-201ENST00000511559 571 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 C1DP5-201ENST00000525775 383 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC022080.3-201ENST00000544433 482 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.77□□□□□ -2.13
FOXA3P55318 CFL2-206ENST00000556161 546 ntTSL 4 BASIC1.77□□□□□ -2.13
FOXA3P55318 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA3P55318 TRAV28-201ENST00000557548 323 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 FAM60BP-201ENST00000578364 658 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC017100.2-201ENST00000584628 355 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
FOXA3P55318 AL161629.2-201ENST00000615347 275 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC025588.4-201ENST00000615802 908 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA3P55318 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA3P55318 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AL160394.1-201ENST00000624765 724 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 MTND2P41-201ENST00000637599 773 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 AC046144.1-201ENST00000478559 1853 ntBASIC1.77□□□□□ -2.13
FOXA3P55318 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.77□□□□□ -2.13
FOXA3P55318 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
FOXA3P55318 MTCO1P6-201ENST00000481192 1384 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC009812.4-201ENST00000569134 1805 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 RNU1-105P-201ENST00000363470 161 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 RNA5SP354-201ENST00000391247 136 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AL360182.1-201ENST00000397433 468 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 LINC01347-201ENST00000417964 355 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 OR6C71P-201ENST00000432580 913 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 NDUFB4P6-201ENST00000436819 366 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC1.76□□□□□ -2.13
FOXA3P55318 MTND2P19-201ENST00000449129 1012 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA3P55318 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC1.76□□□□□ -2.13
FOXA3P55318 RPS27P26-201ENST00000494583 239 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC090255.1-201ENST00000495779 349 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 KLRA1P-201ENST00000503499 986 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 CBX3P3-201ENST00000508108 532 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC1.76□□□□□ -2.13
FOXA3P55318 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 ERP27-202ENST00000540097 993 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA3P55318 AKIRIN1P1-201ENST00000547384 544 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.76□□□□□ -2.13
FOXA3P55318 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA3P55318 MED28P6-201ENST00000558776 231 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA3P55318 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC1.76□□□□□ -2.13
FOXA3P55318 AC079089.3-201ENST00000603094 673 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC025588.3-201ENST00000604182 274 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 HMGB1P24-202ENST00000615653 685 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC090116.1-201ENST00000615679 446 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC1.76□□□□□ -2.13
FOXA3P55318 AC018926.3-201ENST00000618841 406 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 AC068620.4-201ENST00000636730 1182 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
FOXA3P55318 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 AL137003.2-201ENST00000606924 2538 ntBASIC1.76□□□□□ -2.13
FOXA3P55318 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
FOXA3P55318 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.76□□□□□ -2.13
FOXA3P55318 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA3P55318 AC022336.2-201ENST00000568966 2538 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA3P55318 HMGB1P5-201ENST00000255320 642 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 MIR421-201ENST00000365696 85 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 CRP-202ENST00000368110 667 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA3P55318 SNORA51.11-201ENST00000384442 131 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXA3P55318 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA3P55318 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA3P55318 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA3P55318 AL355497.1-201ENST00000406262 551 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 VTA1P1-201ENST00000414044 866 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 TATDN1P1-201ENST00000414123 891 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 ARL2BPP3-201ENST00000421226 480 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
FOXA3P55318 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA3P55318 AC004865.1-201ENST00000442276 1003 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 COX6CP12-201ENST00000446748 202 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 AC004022.1-201ENST00000447766 1066 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 DPPA3P1-201ENST00000448050 469 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 RPL7P49-201ENST00000471402 708 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 RPL23AP45-201ENST00000476406 468 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 RPL31P41-201ENST00000477967 372 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 AC004263.1-201ENST00000479327 332 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 GZMAP1-201ENST00000503054 631 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA3P55318 RNU6-488P-201ENST00000515918 99 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 COX6CP5-201ENST00000527162 228 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
FOXA3P55318 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC1.75□□□□□ -2.13
FOXA3P55318 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.75□□□□□ -2.13
FOXA3P55318 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC1.75□□□□□ -2.13
FOXA3P55318 RPL23AP84-201ENST00000571193 464 ntBASIC1.75□□□□□ -2.13
FOXA3P55318 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms