Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RPL21P47-201ENST00000483696 477 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH6P52701 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH6P52701 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.3□□□□□ -1.88
MSH6P52701 CKS1BP7-201ENST00000522230 235 ntBASIC3.3□□□□□ -1.88
MSH6P52701 IGHV3-76-201ENST00000522465 295 ntBASIC3.3□□□□□ -1.88
MSH6P52701 MTND2P26-201ENST00000528255 1029 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AP003168.1-201ENST00000530091 307 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AP004242.1-201ENST00000533701 349 ntBASIC3.3□□□□□ -1.88
MSH6P52701 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC3.3□□□□□ -1.88
MSH6P52701 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.3□□□□□ -1.88
MSH6P52701 AC096586.1-201ENST00000610267 561 ntBASIC3.3□□□□□ -1.88
MSH6P52701 RNU6-156P-201ENST00000621869 107 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AL356094.1-201ENST00000624663 1212 ntBASIC3.3□□□□□ -1.88
MSH6P52701 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
MSH6P52701 ZNF33CP-201ENST00000432492 2030 ntBASIC3.3□□□□□ -1.88
MSH6P52701 AC011460.1-201ENST00000636268 1834 ntBASIC3.3□□□□□ -1.88
MSH6P52701 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
MSH6P52701 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
MSH6P52701 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSH6P52701 SNORA51.12-201ENST00000384448 134 ntBASIC3.29□□□□□ -1.88
MSH6P52701 PTGES3P2-201ENST00000407942 482 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AL445183.3-201ENST00000414168 502 ntBASIC3.29□□□□□ -1.88
MSH6P52701 ELOCP6-201ENST00000429066 328 ntBASIC3.29□□□□□ -1.88
MSH6P52701 RPL17P35-201ENST00000432217 549 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH6P52701 ELOCP12-201ENST00000458706 328 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AC078857.1-201ENST00000469870 667 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AC126182.1-201ENST00000478134 357 ntBASIC3.29□□□□□ -1.88
MSH6P52701 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.29□□□□□ -1.88
MSH6P52701 AC008885.2-201ENST00000509506 930 ntBASIC3.29□□□□□ -1.88
MSH6P52701 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH6P52701 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC3.29□□□□□ -1.88
MSH6P52701 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.29□□□□□ -1.88
MSH6P52701 RNU6-1053P-201ENST00000515930 101 ntBASIC3.29□□□□□ -1.88
MSH6P52701 SNORA31.1-201ENST00000515993 133 ntBASIC3.29□□□□□ -1.88
MSH6P52701 SNORA31.5-201ENST00000516190 133 ntBASIC3.29□□□□□ -1.88
MSH6P52701 RN7SKP96-201ENST00000516948 297 ntBASIC3.29□□□□□ -1.88
MSH6P52701 RN7SKP234-201ENST00000517173 224 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.29□□□□□ -1.88
MSH6P52701 AC123904.3-201ENST00000547218 814 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH6P52701 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH6P52701 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH6P52701 AC006213.5-201ENST00000619673 288 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AC020923.1-201ENST00000624021 917 ntBASIC3.29□□□□□ -1.88
MSH6P52701 AL590396.2-201ENST00000636511 1041 ntBASIC3.29□□□□□ -1.88
MSH6P52701 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSH6P52701 NSRP1P1-201ENST00000444067 1693 ntBASIC3.29□□□□□ -1.88
MSH6P52701 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
MSH6P52701 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.29□□□□□ -1.88
MSH6P52701 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
MSH6P52701 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSH6P52701 MIR153-1-201ENST00000384914 90 ntBASIC3.28□□□□□ -1.88
MSH6P52701 RNA5SP210-201ENST00000391034 120 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC008173.1-201ENST00000418901 264 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AL606495.1-201ENST00000422100 813 ntBASIC3.28□□□□□ -1.88
MSH6P52701 MTCO1P43-201ENST00000431831 488 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC004865.1-201ENST00000442276 1003 ntBASIC3.28□□□□□ -1.88
MSH6P52701 RPL36AP33-201ENST00000450395 310 ntBASIC3.28□□□□□ -1.88
MSH6P52701 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
MSH6P52701 RN7SKP210-201ENST00000459176 261 ntBASIC3.28□□□□□ -1.88
MSH6P52701 snoU13.7-201ENST00000459220 104 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH6P52701 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH6P52701 AC104108.1-201ENST00000509930 412 ntBASIC3.28□□□□□ -1.88
MSH6P52701 RNU6-295P-201ENST00000516901 104 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.28□□□□□ -1.88
MSH6P52701 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH6P52701 AP003049.1-201ENST00000529418 457 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC007536.1-201ENST00000533382 349 ntBASIC3.28□□□□□ -1.88
MSH6P52701 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH6P52701 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.28□□□□□ -1.88
MSH6P52701 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH6P52701 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH6P52701 AC095057.3-201ENST00000567102 1157 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.28□□□□□ -1.88
MSH6P52701 AL627309.6-201ENST00000606857 840 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC092608.3-201ENST00000625017 386 ntBASIC3.28□□□□□ -1.88
MSH6P52701 AC097372.4-201ENST00000625025 466 ntBASIC3.28□□□□□ -1.88
MSH6P52701 CRYM-AS1-204ENST00000637983 556 ntBASIC3.28□□□□□ -1.88
MSH6P52701 MTND4P8-201ENST00000514997 1362 ntBASIC3.28□□□□□ -1.89
MSH6P52701 AL512283.1-201ENST00000606756 1384 ntBASIC3.28□□□□□ -1.89
MSH6P52701 RNU6-609P-201ENST00000365459 107 ntBASIC3.27□□□□□ -1.89
MSH6P52701 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
MSH6P52701 DNAJC19P6-201ENST00000401853 280 ntBASIC3.27□□□□□ -1.89
MSH6P52701 RN7SKP32-201ENST00000410167 303 ntBASIC3.27□□□□□ -1.89
MSH6P52701 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC3.27□□□□□ -1.89
MSH6P52701 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.27□□□□□ -1.89
MSH6P52701 AC017099.1-201ENST00000448261 1028 ntBASIC3.27□□□□□ -1.89
MSH6P52701 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC3.27□□□□□ -1.89
MSH6P52701 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC3.27□□□□□ -1.89
MSH6P52701 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH6P52701 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.27□□□□□ -1.89
MSH6P52701 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.27□□□□□ -1.89
MSH6P52701 RNA5SP108-201ENST00000605921 117 ntBASIC3.27□□□□□ -1.89
MSH6P52701 AC021851.1-201ENST00000608537 1082 ntBASIC3.27□□□□□ -1.89
MSH6P52701 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.27□□□□□ -1.89
MSH6P52701 AC132825.7-201ENST00000638744 335 ntBASIC3.27□□□□□ -1.89
MSH6P52701 FAM157B-203ENST00000639350 358 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms