Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 MTND4P25-201ENST00000441039 533 ntBASIC4.67□□□□□ -1.66
CBX4O00257 USP9YP8-201ENST00000441913 500 ntBASIC4.67□□□□□ -1.66
CBX4O00257 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.67□□□□□ -1.66
CBX4O00257 RPL7AP28-201ENST00000464513 571 ntBASIC4.67□□□□□ -1.66
CBX4O00257 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.67□□□□□ -1.66
CBX4O00257 PCBP2P3-201ENST00000509726 843 ntBASIC4.67□□□□□ -1.66
CBX4O00257 LRRC34P2-201ENST00000514850 553 ntBASIC4.67□□□□□ -1.66
CBX4O00257 RNA5SP401-201ENST00000515920 127 ntBASIC4.67□□□□□ -1.66
CBX4O00257 CENPUP1-201ENST00000526649 1202 ntBASIC4.67□□□□□ -1.66
CBX4O00257 OR5BN1P-201ENST00000532955 829 ntBASIC4.67□□□□□ -1.66
CBX4O00257 ADI1P3-201ENST00000549509 470 ntBASIC4.67□□□□□ -1.66
CBX4O00257 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.67□□□□□ -1.66
CBX4O00257 AC015912.2-201ENST00000571053 181 ntBASIC4.67□□□□□ -1.66
CBX4O00257 AC015917.1-201ENST00000579654 510 ntBASIC4.67□□□□□ -1.66
CBX4O00257 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 AC130324.3-201ENST00000614165 542 ntBASIC4.67□□□□□ -1.66
CBX4O00257 MIR8069-1-201ENST00000616627 86 ntBASIC4.67□□□□□ -1.66
CBX4O00257 AC104260.1-201ENST00000616660 539 ntBASIC4.67□□□□□ -1.66
CBX4O00257 MIR8069-2-201ENST00000621412 86 ntBASIC4.67□□□□□ -1.66
CBX4O00257 AC024614.3-201ENST00000637860 256 ntBASIC4.67□□□□□ -1.66
CBX4O00257 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 DHX9P1-201ENST00000436565 3076 ntBASIC4.67□□□□□ -1.66
CBX4O00257 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
CBX4O00257 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.67□□□□□ -1.66
CBX4O00257 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
CBX4O00257 AC139713.2-215ENST00000641428 5037 ntBASIC4.66□□□□□ -1.66
CBX4O00257 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
CBX4O00257 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CBX4O00257 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.66□□□□□ -1.66
CBX4O00257 NEAT1-202ENST00000501122 22743 ntBASIC4.66□□□□□ -1.66
CBX4O00257 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CBX4O00257 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
CBX4O00257 AC073343.1-201ENST00000328239 651 ntBASIC4.66□□□□□ -1.66
CBX4O00257 RNA5SP515-201ENST00000364570 118 ntBASIC4.66□□□□□ -1.66
CBX4O00257 Y_RNA.255-201ENST00000364581 97 ntBASIC4.66□□□□□ -1.66
CBX4O00257 RNU6-996P-201ENST00000365438 107 ntBASIC4.66□□□□□ -1.66
CBX4O00257 MIR659-201ENST00000384963 97 ntBASIC4.66□□□□□ -1.66
CBX4O00257 RNU6-1009P-201ENST00000390996 107 ntBASIC4.66□□□□□ -1.66
CBX4O00257 RNU2-39P-201ENST00000410604 198 ntBASIC4.66□□□□□ -1.66
CBX4O00257 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.66□□□□□ -1.66
CBX4O00257 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.66□□□□□ -1.66
CBX4O00257 AP000852.1-201ENST00000472460 573 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC126389.1-201ENST00000477436 290 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC233702.1-201ENST00000482905 502 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC116562.3-201ENST00000506136 177 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC114786.4-201ENST00000508771 728 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC093840.1-201ENST00000511599 336 ntBASIC4.66□□□□□ -1.66
CBX4O00257 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 AC068587.5-201ENST00000528506 175 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.66□□□□□ -1.66
CBX4O00257 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.66□□□□□ -1.66
CBX4O00257 UBE2V2P2-201ENST00000587677 504 ntBASIC4.66□□□□□ -1.66
CBX4O00257 HMGB2P1-201ENST00000591146 634 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC010591.1-201ENST00000603941 649 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AL121992.2-201ENST00000606262 256 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.66□□□□□ -1.66
CBX4O00257 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.66□□□□□ -1.66
CBX4O00257 AP005019.3-201ENST00000620418 560 ntBASIC4.66□□□□□ -1.66
CBX4O00257 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.66□□□□□ -1.66
CBX4O00257 AL672167.1-203ENST00000641299 2975 ntBASIC4.66□□□□□ -1.66
CBX4O00257 AC006020.1-201ENST00000420179 1854 ntBASIC4.66□□□□□ -1.66
CBX4O00257 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
CBX4O00257 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
CBX4O00257 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.65□□□□□ -1.66
CBX4O00257 NACAP2-201ENST00000318548 624 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RN7SKP227-201ENST00000364445 330 ntBASIC4.65□□□□□ -1.67
CBX4O00257 MIR135A2-201ENST00000384854 100 ntBASIC4.65□□□□□ -1.67
CBX4O00257 MIR454-201ENST00000390180 115 ntBASIC4.65□□□□□ -1.67
CBX4O00257 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CBX4O00257 RN7SKP27-201ENST00000410684 333 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RNU6-1068P-201ENST00000410958 103 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RPL21P24-201ENST00000413752 448 ntBASIC4.65□□□□□ -1.67
CBX4O00257 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.65□□□□□ -1.67
CBX4O00257 SDCBPP3-201ENST00000419629 891 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.65□□□□□ -1.67
CBX4O00257 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC4.65□□□□□ -1.67
CBX4O00257 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.65□□□□□ -1.67
CBX4O00257 RPS20P20-201ENST00000460498 340 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AP000942.1-201ENST00000463969 747 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AL591473.1-201ENST00000464297 313 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AC011276.1-201ENST00000469688 323 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AC010618.1-201ENST00000469924 477 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AC109327.1-201ENST00000471666 403 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RPS27AP1-201ENST00000475545 471 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AL163973.1-201ENST00000484753 577 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AC105417.1-201ENST00000514691 285 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RNU6-507P-201ENST00000516045 100 ntBASIC4.65□□□□□ -1.67
CBX4O00257 RNA5SP464-201ENST00000516251 108 ntBASIC4.65□□□□□ -1.67
CBX4O00257 SNORD60.2-201ENST00000516883 86 ntBASIC4.65□□□□□ -1.67
CBX4O00257 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.65□□□□□ -1.67
CBX4O00257 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.65□□□□□ -1.67
CBX4O00257 AC123904.3-201ENST00000547218 814 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms