Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 AL139099.4-201ENST00000614802 114 ntBASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 AC073869.8-201ENST00000641806 335 ntBASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 AL161756.3-201ENST00000641216 2071 ntBASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 AC025470.1-201ENST00000510053 2032 ntBASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 DNM1P47-203ENST00000571780 12667 ntBASIC6.09□□□□□ -1.43
LIMD1Q9UGP4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.44
LIMD1Q9UGP4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 Y_RNA.48-201ENST00000362710 103 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC005042.1-201ENST00000393397 800 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 HMGA1P8-201ENST00000414130 321 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RPS4XP5-201ENST00000419038 768 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RPL21P91-201ENST00000429231 479 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RPL12P3-201ENST00000440080 396 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RPL29P29-201ENST00000448725 423 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RN7SL172P-201ENST00000460535 303 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC108161.1-201ENST00000461060 402 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RN7SL808P-201ENST00000496066 299 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC113155.1-201ENST00000511141 769 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 SNORD116-26-201ENST00000516006 96 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 RNU6-897P-201ENST00000517135 105 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AP003733.2-201ENST00000529409 171 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 CPDP1-201ENST00000579660 283 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC067852.4-201ENST00000590314 478 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 AC034102.8-201ENST00000615146 484 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 MIR8080-201ENST00000622224 89 ntBASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
LIMD1Q9UGP4 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC026951.1-201ENST00000559530 2459 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC005224.3-201ENST00000584683 2140 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC005725.1-201ENST00000577346 2607 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RNU6-212P-201ENST00000362642 104 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RNA5SP507-201ENST00000363603 121 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RPL23AP27-201ENST00000415161 451 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AL590135.1-201ENST00000422215 156 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RNU7-169P-201ENST00000459456 61 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RNU6-1037P-201ENST00000459571 107 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC133134.1-201ENST00000466800 359 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 GZMAP1-201ENST00000503054 631 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 HMGB1P35-201ENST00000503360 598 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 HMGB3P17-201ENST00000504195 649 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 RNU6-406P-201ENST00000516470 107 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 IGKV2D-23-201ENST00000518179 286 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 ASB8-202ENST00000535055 657 ntTSL 2 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 MIR4260-201ENST00000583107 67 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AP000787.2-201ENST00000604432 568 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC008962.1-201ENST00000605729 304 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC064801.1-201ENST00000612025 407 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 SMG1P6-201ENST00000532337 2930 ntBASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
LIMD1Q9UGP4 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC6.06□□□□□ -1.44
LIMD1Q9UGP4 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms