Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 MTND6P12-201ENST00000428247 522 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC138761.5-201ENST00000433967 325 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RPL23AP50-201ENST00000434149 455 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RHOT1P3-201ENST00000436571 331 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 EEF1B2P6-201ENST00000445713 673 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RNU7-187P-201ENST00000458985 68 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC091180.1-201ENST00000462104 372 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RN7SL583P-201ENST00000475692 287 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RPL7P51-201ENST00000490532 749 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 PTP4A1P4-201ENST00000512479 322 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RNU6-976P-201ENST00000516086 111 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 SNORA31.8-201ENST00000516327 108 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RN7SKP295-201ENST00000517264 153 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC010547.6-201ENST00000571789 193 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC083806.3-201ENST00000614016 455 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AL136964.1-201ENST00000622038 2990 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 AC006206.1-201ENST00000544842 3387 ntBASIC4.32□□□□□ -1.72
CCDC140Q96MF4 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CCDC140Q96MF4 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 LINC01963-201ENST00000562038 3148 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC087516.1-201ENST00000561236 2428 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.112-201ENST00000363250 102 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU6-1059P-201ENST00000363752 98 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.324-201ENST00000365165 102 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU6-1329P-201ENST00000365664 107 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU11-201ENST00000387069 134 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL009179.1-201ENST00000406085 265 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU6-1025P-201ENST00000410629 104 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU6-607P-201ENST00000411283 108 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 CYCSP33-201ENST00000414485 327 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC007161.1-204ENST00000423039 460 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC097713.2-201ENST00000430199 356 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 BX276092.6-201ENST00000430476 250 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL035666.1-201ENST00000446195 348 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC083899.1-201ENST00000454465 3819 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 BX276092.8-201ENST00000455722 250 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 HMGB3P30-201ENST00000457863 606 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC018437.1-201ENST00000492214 406 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC008716.1-201ENST00000511084 513 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC097486.1-201ENST00000515331 210 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 SCARNA15.2-201ENST00000516409 127 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RNU6-1046P-201ENST00000516538 107 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 IGKV3D-34-201ENST00000522638 302 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 HIGD1AP5-201ENST00000529959 259 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL157871.3-201ENST00000557231 293 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MRPS21P7-201ENST00000566937 238 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MIR3921-201ENST00000577308 85 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 BNIP3P16-201ENST00000589779 534 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC008521.2-201ENST00000591021 259 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC005255.1-201ENST00000593748 216 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AL360012.1-201ENST00000602813 131 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC005344.1-201ENST00000613391 459 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC091925.1-201ENST00000623204 462 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MIR4302-201ENST00000638058 60 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 AC010266.2-201ENST00000564741 3255 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms