Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RN7SKP116-201ENST00000516902 319 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 CCNG2P1-201ENST00000549521 1000 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 MIR5186-201ENST00000577504 120 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC025588.3-201ENST00000604182 274 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AL022154.1-201ENST00000604698 785 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 IGHV3-29-201ENST00000604817 344 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC007684.1-201ENST00000609671 477 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC108479.2-201ENST00000617314 601 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 AC008725.1-201ENST00000605123 2263 ntBASIC4.58□□□□□ -1.68
VPS53Q5VIR6 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS53Q5VIR6 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RNA5SP97-201ENST00000365006 84 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RNU5A-6P-201ENST00000384136 116 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RNU6-297P-201ENST00000384636 107 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 U8.11-201ENST00000384699 133 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 U8.12-201ENST00000384701 133 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 U8.14-201ENST00000390843 143 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AL121972.1-201ENST00000402023 252 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 MIR1305-201ENST00000408300 86 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 Y_RNA.598-201ENST00000410480 95 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 USP9YP13-201ENST00000417797 480 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 ISCA1P1-201ENST00000426679 387 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 FTH1P6-201ENST00000430768 320 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC109583.1-201ENST00000432156 268 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC098824.1-201ENST00000453565 980 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AL033528.1-201ENST00000453780 140 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RNU7-136P-201ENST00000458819 69 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 U8.18-201ENST00000459285 133 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 KLF3P2-201ENST00000465138 268 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC146944.2-203ENST00000502493 354 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC139495.1-202ENST00000513164 354 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 RNU4ATAC10P-201ENST00000516967 122 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 IGKV2D-36-201ENST00000518643 226 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 SUMO2P20-201ENST00000520803 283 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 ZNF519P2-201ENST00000557032 169 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 MIR5685-201ENST00000579080 79 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC090616.5-202ENST00000582111 297 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 BNIP3P23-201ENST00000599655 511 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC097468.3-201ENST00000607956 456 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AL159169.3-201ENST00000608871 561 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC103710.4-201ENST00000609301 899 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC131902.3-201ENST00000611767 581 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC022306.2-201ENST00000617563 647 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC006378.2-201ENST00000623178 2476 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 MTND5P26-201ENST00000426018 1752 ntBASIC4.57□□□□□ -1.68
VPS53Q5VIR6 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
VPS53Q5VIR6 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 OR4G2P-201ENST00000328113 903 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 SNORA40.3-201ENST00000390964 122 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 Y_RNA.604-201ENST00000410574 102 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 MTND1P23-201ENST00000416931 372 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AIMP1P1-201ENST00000418670 937 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AL356583.2-201ENST00000426536 280 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 MRPS10P2-201ENST00000431226 381 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC244505.5-201ENST00000443639 207 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 USP9YP12-201ENST00000450481 570 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 snoU109.1-201ENST00000459339 135 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC026410.2-201ENST00000460281 156 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC022034.3-201ENST00000471393 478 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC004924.1-201ENST00000480160 781 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 TRBV12-2-201ENST00000489763 344 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC022447.3-201ENST00000506865 495 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 RN7SKP244-201ENST00000516513 307 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AP003385.6-201ENST00000531603 374 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 EEF1B2P4-201ENST00000551398 348 ntBASIC4.56□□□□□ -1.68
VPS53Q5VIR6 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC4.56□□□□□ -1.68
VPS53Q5VIR6 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms