Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC2.05□□□□□ -2.08
CHD3Q12873 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC2.05□□□□□ -2.08
CHD3Q12873 AL162233.1-201ENST00000620014 944 ntBASIC2.05□□□□□ -2.08
CHD3Q12873 MIR6766-201ENST00000622641 72 ntBASIC2.05□□□□□ -2.08
CHD3Q12873 AC012594.1-272ENST00000625790 710 ntTSL 5 BASIC2.05□□□□□ -2.08
CHD3Q12873 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CHD3Q12873 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.04□□□□□ -2.08
CHD3Q12873 RN7SKP140-201ENST00000411196 284 ntBASIC2.04□□□□□ -2.08
CHD3Q12873 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
CHD3Q12873 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.04□□□□□ -2.08
CHD3Q12873 RPL9P6-201ENST00000492764 598 ntBASIC2.04□□□□□ -2.08
CHD3Q12873 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC2.04□□□□□ -2.08
CHD3Q12873 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.04□□□□□ -2.08
CHD3Q12873 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.04□□□□□ -2.08
CHD3Q12873 AC125611.2-201ENST00000551907 647 ntBASIC2.04□□□□□ -2.08
CHD3Q12873 AP004372.1-201ENST00000604842 844 ntBASIC2.04□□□□□ -2.08
CHD3Q12873 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.04□□□□□ -2.08
CHD3Q12873 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
CHD3Q12873 Y_RNA.164-201ENST00000363709 102 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 GSTA9P-201ENST00000406231 611 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC2.03□□□□□ -2.08
CHD3Q12873 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.03□□□□□ -2.08
CHD3Q12873 RPS15AP7-201ENST00000439294 405 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 ADAM3A-203ENST00000461344 2157 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 MTCO3P35-201ENST00000485582 781 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.03□□□□□ -2.08
CHD3Q12873 AP000926.3-201ENST00000497201 299 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC2.03□□□□□ -2.08
CHD3Q12873 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.03□□□□□ -2.08
CHD3Q12873 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CHD3Q12873 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.03□□□□□ -2.08
CHD3Q12873 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CHD3Q12873 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC2.03□□□□□ -2.08
CHD3Q12873 AP003117.1-201ENST00000602771 554 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AL645944.1-201ENST00000603857 493 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CHD3Q12873 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
CHD3Q12873 AC006020.1-201ENST00000420179 1854 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
CHD3Q12873 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
CHD3Q12873 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
CHD3Q12873 RNU6-1180P-201ENST00000364935 107 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AL592045.1-201ENST00000429867 352 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.03□□□□□ -2.08
CHD3Q12873 AC026412.2-201ENST00000512270 1075 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 RNU6-548P-201ENST00000517083 115 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.03□□□□□ -2.08
CHD3Q12873 AC074029.1-201ENST00000552531 1044 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.03□□□□□ -2.08
CHD3Q12873 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.03□□□□□ -2.08
CHD3Q12873 AL353997.5-201ENST00000618886 171 ntBASIC2.03□□□□□ -2.08
CHD3Q12873 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.09
CHD3Q12873 RPL23AP36-201ENST00000413895 458 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC2.02□□□□□ -2.09
CHD3Q12873 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.02□□□□□ -2.09
CHD3Q12873 AC096638.1-201ENST00000444678 216 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.02□□□□□ -2.09
CHD3Q12873 MTCYBP14-201ENST00000457471 715 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 LINC00888-204ENST00000487386 421 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 AC092436.1-201ENST00000506450 503 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC2.02□□□□□ -2.09
CHD3Q12873 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC2.02□□□□□ -2.09
CHD3Q12873 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.02□□□□□ -2.09
CHD3Q12873 CYP3A51P-201ENST00000633513 256 ntBASIC2.02□□□□□ -2.09
CHD3Q12873 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC2.02□□□□□ -2.09
CHD3Q12873 RNA5SP139-201ENST00000364340 117 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 RNU6-1027P-201ENST00000383998 107 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 MIR518C-201ENST00000384822 101 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CHD3Q12873 MTCO2P17-201ENST00000424336 677 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 AL392003.1-201ENST00000434394 243 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 MED6P1-201ENST00000439659 713 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 AL157827.1-201ENST00000447622 132 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 RPL7P52-201ENST00000449200 742 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 RPL23AP42-201ENST00000471152 471 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC2.01□□□□□ -2.09
CHD3Q12873 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 RNU6-1308P-201ENST00000516817 103 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 RN7SKP277-201ENST00000516895 283 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CHD3Q12873 CENPUP2-201ENST00000555897 1186 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
CHD3Q12873 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.01□□□□□ -2.09
CHD3Q12873 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CHD3Q12873 RNU1-51P-201ENST00000365345 176 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
CHD3Q12873 AL121882.1-201ENST00000422893 417 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 Z77249.1-201ENST00000444622 1175 ntBASIC2.01□□□□□ -2.09
CHD3Q12873 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC2.01□□□□□ -2.09
CHD3Q12873 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC2.01□□□□□ -2.09
CHD3Q12873 MAL2-205ENST00000521048 575 ntTSL 4 BASIC2.01□□□□□ -2.09
CHD3Q12873 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.01□□□□□ -2.09
CHD3Q12873 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CHD3Q12873 AP000676.4-201ENST00000624659 623 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms