Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL4A4P53420 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC2.87□□□□□ -1.95
COL4A4P53420 AL391156.1-201ENST00000554965 554 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC010546.1-201ENST00000569391 485 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC021171.1-201ENST00000603137 706 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC005046.1-201ENST00000608515 625 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC046143.2-201ENST00000609789 160 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC025016.1-201ENST00000616746 682 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC093875.1-201ENST00000623688 504 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.87□□□□□ -1.95
COL4A4P53420 AC116158.1-201ENST00000560231 2129 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 TTC39DP-201ENST00000416781 1688 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL4A4P53420 AC099786.3-201ENST00000565735 1410 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 AC090229.1-201ENST00000590983 1609 ntBASIC2.87□□□□□ -1.95
COL4A4P53420 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC2.86□□□□□ -1.95
COL4A4P53420 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 SNORD62.1-201ENST00000362541 86 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 Y_RNA.62-201ENST00000362840 99 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 MIR1289-2-201ENST00000408360 111 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 RPL7P10-201ENST00000417407 739 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 HMGB1P49-201ENST00000418882 569 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.86□□□□□ -1.95
COL4A4P53420 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC2.86□□□□□ -1.95
COL4A4P53420 AL360221.1-201ENST00000445989 335 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 MTND2P19-201ENST00000449129 1012 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 RNU7-170P-201ENST00000459303 61 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 RN7SL297P-201ENST00000483161 293 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 POU5F1P7-201ENST00000508759 541 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 XKRY-201ENST00000510392 1100 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC093752.1-206ENST00000511823 336 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 MTND5P13-201ENST00000513046 1079 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC2.86□□□□□ -1.95
COL4A4P53420 MIR3186-201ENST00000577404 85 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC124283.4-201ENST00000581815 456 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC087468.1-201ENST00000604365 630 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC105129.3-201ENST00000605455 485 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC069234.5-201ENST00000611056 416 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC116165.2-201ENST00000616705 206 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 AC025034.2-201ENST00000623264 286 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AC103706.2-201ENST00000638080 240 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 OR4G1P-202ENST00000641173 1788 ntBASIC2.86□□□□□ -1.95
COL4A4P53420 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL4A4P53420 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.86□□□□□ -1.95
COL4A4P53420 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
COL4A4P53420 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
COL4A4P53420 RNU6-792P-201ENST00000363490 107 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RNA5SP99-201ENST00000364020 114 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RNU6-354P-201ENST00000383862 107 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RNU6-610P-201ENST00000384264 107 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MIR181A2-201ENST00000384863 110 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MIR513B-201ENST00000385136 84 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 LSM5-206ENST00000409987 504 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A4P53420 AL356320.2-201ENST00000417263 507 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 USP9YP26-201ENST00000421008 661 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AL606495.1-201ENST00000422100 813 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC098826.1-201ENST00000433943 471 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A4P53420 AL592437.1-201ENST00000443781 492 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AL358794.1-201ENST00000445689 381 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 RPL31P3-201ENST00000458430 332 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RN7SL330P-201ENST00000469709 307 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MTND3P7-201ENST00000474435 343 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MTND2P14-201ENST00000482139 351 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC113420.1-201ENST00000507903 571 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC096725.1-201ENST00000514266 313 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 MTCYBP41-201ENST00000528913 1123 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 AP000867.2-201ENST00000532468 320 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 TRAV37-201ENST00000553906 342 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.85□□□□□ -1.95
COL4A4P53420 AC005771.1-201ENST00000585581 349 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC012119.1-201ENST00000603184 222 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC016727.1-205ENST00000605437 569 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 AC017083.3-201ENST00000609955 700 ntBASIC2.85□□□□□ -1.95
COL4A4P53420 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms