Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL133216.2-202ENST00000634512 349 ntBASIC4.43□□□□□ -1.7
MSX2P35548 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.43□□□□□ -1.7
MSX2P35548 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
MSX2P35548 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
MSX2P35548 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.42□□□□□ -1.7
MSX2P35548 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSX2P35548 AC068254.2-201ENST00000623938 3577 ntBASIC4.42□□□□□ -1.7
MSX2P35548 Z73965.1-201ENST00000623412 2297 ntBASIC4.42□□□□□ -1.7
MSX2P35548 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX2P35548 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSX2P35548 Y_RNA.22-201ENST00000362492 102 ntBASIC4.42□□□□□ -1.7
MSX2P35548 Y_RNA.216-201ENST00000364205 93 ntBASIC4.42□□□□□ -1.7
MSX2P35548 Y_RNA.259-201ENST00000364619 101 ntBASIC4.42□□□□□ -1.7
MSX2P35548 SNORA4.3-201ENST00000365564 137 ntBASIC4.42□□□□□ -1.7
MSX2P35548 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
MSX2P35548 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 RNU6-43P-201ENST00000384302 107 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RNU6-39P-201ENST00000384344 107 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RNU6-171P-201ENST00000384354 107 ntBASIC4.42□□□□□ -1.7
MSX2P35548 DPPA2P3-201ENST00000411853 655 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 DDX39BP1-205ENST00000422507 192 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RPL21P91-201ENST00000429231 479 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.42□□□□□ -1.7
MSX2P35548 ERLEC1P1-201ENST00000433806 578 ntBASIC4.42□□□□□ -1.7
MSX2P35548 TIMM9P1-201ENST00000436122 256 ntBASIC4.42□□□□□ -1.7
MSX2P35548 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
MSX2P35548 GTF2IP13-201ENST00000438487 386 ntBASIC4.42□□□□□ -1.7
MSX2P35548 PTMAP6-201ENST00000439110 327 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC108734.1-201ENST00000439549 399 ntBASIC4.42□□□□□ -1.7
MSX2P35548 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 SAGE4P-201ENST00000442271 3381 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.42□□□□□ -1.7
MSX2P35548 AC007547.1-201ENST00000462177 490 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RPL37P6-202ENST00000464216 403 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC006512.1-201ENST00000468816 291 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC012158.1-204ENST00000483430 465 ntBASIC4.42□□□□□ -1.7
MSX2P35548 UBA52P7-201ENST00000486088 380 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 AC114797.1-201ENST00000514003 728 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RNU4-29P-201ENST00000515943 174 ntBASIC4.42□□□□□ -1.7
MSX2P35548 Y_RNA.665-201ENST00000516177 98 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RN7SKP256-201ENST00000517201 314 ntBASIC4.42□□□□□ -1.7
MSX2P35548 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.42□□□□□ -1.7
MSX2P35548 NARSP2-201ENST00000518524 679 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AP003497.1-201ENST00000528472 562 ntBASIC4.42□□□□□ -1.7
MSX2P35548 PTP4A1P6-201ENST00000531034 478 ntBASIC4.42□□□□□ -1.7
MSX2P35548 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.42□□□□□ -1.7
MSX2P35548 AL049779.2-201ENST00000553847 315 ntBASIC4.42□□□□□ -1.7
MSX2P35548 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 MIR4691-201ENST00000583764 85 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AP001029.3-201ENST00000588063 596 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC006504.6-201ENST00000590142 199 ntBASIC4.42□□□□□ -1.7
MSX2P35548 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.42□□□□□ -1.7
MSX2P35548 AC068790.3-201ENST00000602988 553 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL512782.1-201ENST00000603093 364 ntBASIC4.42□□□□□ -1.7
MSX2P35548 SNRPGP17-201ENST00000603780 214 ntBASIC4.42□□□□□ -1.7
MSX2P35548 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 OR6R2P-201ENST00000609216 300 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL596245.1-201ENST00000618994 362 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC009318.4-201ENST00000620496 486 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL023881.1-201ENST00000621088 301 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AC018445.2-201ENST00000622987 260 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL353662.3-201ENST00000625131 237 ntBASIC4.42□□□□□ -1.7
MSX2P35548 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.42□□□□□ -1.7
MSX2P35548 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
MSX2P35548 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
MSX2P35548 AC087190.4-201ENST00000574616 8334 ntBASIC4.42□□□□□ -1.7
MSX2P35548 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 AC109780.1-201ENST00000451768 1344 ntBASIC4.42□□□□□ -1.7
MSX2P35548 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
MSX2P35548 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
MSX2P35548 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
MSX2P35548 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX2P35548 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX2P35548 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.41□□□□□ -1.7
MSX2P35548 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.41□□□□□ -1.7
MSX2P35548 MAPK10-320ENST00000641462 6696 ntBASIC4.41□□□□□ -1.7
MSX2P35548 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
MSX2P35548 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.41□□□□□ -1.7
MSX2P35548 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms