Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GDI2P2-201ENST00000445131 608 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 VN1R10P-201ENST00000447106 875 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AL157827.1-201ENST00000447622 132 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 Z99127.3-201ENST00000448158 395 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 MTND1P18-201ENST00000448191 573 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC079776.3-201ENST00000450665 370 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC4.45□□□□□ -1.7
COL3A1P02461 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.45□□□□□ -1.7
COL3A1P02461 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 TRBV8-2-201ENST00000475637 270 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 MTND6P6-201ENST00000478031 263 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 AC024589.1-201ENST00000512207 263 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 ARL2BPP6-201ENST00000512757 439 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 RNU1-103P-201ENST00000516502 125 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.45□□□□□ -1.7
COL3A1P02461 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.45□□□□□ -1.7
COL3A1P02461 YPEL5P2-201ENST00000605553 359 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 AC055764.2-201ENST00000610089 670 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.45□□□□□ -1.7
COL3A1P02461 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.45□□□□□ -1.7
COL3A1P02461 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL3A1P02461 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL3A1P02461 CR383658.2-201ENST00000547576 1525 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 OR52E6-202ENST00000379946 954 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.44□□□□□ -1.7
COL3A1P02461 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.44□□□□□ -1.7
COL3A1P02461 AC233728.2-201ENST00000425348 757 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.44□□□□□ -1.7
COL3A1P02461 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC4.44□□□□□ -1.7
COL3A1P02461 AC097499.1-201ENST00000444277 208 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC4.44□□□□□ -1.7
COL3A1P02461 PSPHP1-201ENST00000450062 261 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC4.44□□□□□ -1.7
COL3A1P02461 RPL23AP35-201ENST00000451906 501 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 AC105252.1-201ENST00000503089 286 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 PDLIM1P4-201ENST00000504327 1006 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 AP002453.2-201ENST00000533503 320 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC4.44□□□□□ -1.7
COL3A1P02461 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC4.44□□□□□ -1.7
COL3A1P02461 UBE2V2P2-201ENST00000587677 504 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC4.44□□□□□ -1.7
COL3A1P02461 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL3A1P02461 AC024023.1-201ENST00000624530 922 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 AC124864.2-201ENST00000624736 186 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL3A1P02461 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
COL3A1P02461 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.44□□□□□ -1.7
COL3A1P02461 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.44□□□□□ -1.7
COL3A1P02461 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL3A1P02461 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC4.44□□□□□ -1.7
COL3A1P02461 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL3A1P02461 AC006504.1-201ENST00000562493 3666 ntBASIC4.44□□□□□ -1.7
COL3A1P02461 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 Y_RNA.450-201ENST00000384198 113 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC096664.2-201ENST00000411843 406 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC234064.1-201ENST00000436312 247 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 MTND4P19-201ENST00000446659 478 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 RPS29P2-201ENST00000479278 136 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.43□□□□□ -1.7
COL3A1P02461 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC021678.1-201ENST00000505195 936 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC108120.2-201ENST00000512973 294 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 MIR2276-201ENST00000516886 89 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 IGHV3-32-201ENST00000519182 355 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.43□□□□□ -1.7
COL3A1P02461 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.43□□□□□ -1.7
COL3A1P02461 AL049870.4-201ENST00000555741 486 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 PCMTD1P2-201ENST00000565017 355 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 MIR5004-201ENST00000579078 107 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 BPTFP1-201ENST00000579209 492 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC012065.4-201ENST00000602445 679 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 AC006557.5-201ENST00000603126 811 ntBASIC4.43□□□□□ -1.7
COL3A1P02461 SEPT7P9-203ENST00000604116 343 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms