Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 AC005261.2-201ENST00000593427 4258 ntBASIC7.78□□□□□ -1.16
CCDC61Q9Y6R9 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC7.77□□□□□ -1.16
CCDC61Q9Y6R9 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AL391516.1-201ENST00000554380 2449 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 SNORA25.1-201ENST00000362326 128 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RNU6-1056P-201ENST00000383996 107 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RNU1-77P-201ENST00000390868 162 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RPL23AP27-201ENST00000415161 451 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 TOMM20P4-201ENST00000427861 435 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RPL23AP65-201ENST00000475608 468 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RN7SL222P-201ENST00000476452 299 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 RPS18P6-201ENST00000476880 458 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 TOMM22P4-201ENST00000511318 336 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC016065.2-201ENST00000514530 444 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 SNORD116-25-201ENST00000516517 92 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 MIR2355-201ENST00000517199 87 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 IGLV3-24-201ENST00000517477 197 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC120057.2-201ENST00000571520 271 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 BDH2P1-201ENST00000602288 736 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC025574.2-201ENST00000615621 514 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC084757.4-201ENST00000616350 526 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 AC010332.2-201ENST00000613083 1904 ntBASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
CCDC61Q9Y6R9 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AC110774.1-201ENST00000623567 2018 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MSL3P1-202ENST00000440028 1468 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AC079753.1-201ENST00000623243 3868 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AC007938.2-201ENST00000604666 2634 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 Y_RNA.218-201ENST00000364218 104 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 RNA5SP267-201ENST00000364893 126 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 Y_RNA.358-201ENST00000365491 99 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 RNU6-225P-201ENST00000384613 103 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MIR186-201ENST00000384988 86 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 GLULP6-201ENST00000399502 913 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AL590399.2-201ENST00000427536 309 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MTATP6P4-201ENST00000427725 675 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 CYCSP6-201ENST00000434498 302 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AC006511.1-201ENST00000470614 315 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 DUTP1-201ENST00000493631 470 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 TRAV32-201ENST00000553993 340 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 MIR4700-201ENST00000578311 74 ntBASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC61Q9Y6R9 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AL034546.1-201ENST00000623740 3693 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 POLH-201ENST00000372226 3322 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 ZNF484-204ENST00000395506 4031 ntTSL 3 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 OLMALINC-203ENST00000641087 3779 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RNU6-701P-201ENST00000384059 107 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RNU6-514P-201ENST00000384208 107 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AL121835.1-201ENST00000404250 354 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RNU2-15P-201ENST00000410692 191 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RAB28P5-201ENST00000427490 651 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 RPS27P18-201ENST00000431701 247 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 TBCAP1-201ENST00000436520 327 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AC007395.1-201ENST00000451333 677 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AL137159.1-201ENST00000452808 512 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AC004453.1-201ENST00000487895 408 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 COX7A2P2-201ENST00000505291 250 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AP005660.1-201ENST00000522972 293 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 DEFB108D-201ENST00000527787 222 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 AC023824.2-201ENST00000566185 400 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 MIR4311-201ENST00000580794 100 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 Y_RNA.802-201ENST00000614892 130 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 IGHVIII-44-202ENST00000636235 289 ntBASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
CCDC61Q9Y6R9 TCF7L2-220ENST00000543371 4037 ntTSL 1 (best) BASIC7.75□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms