Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC008669.1-201ENST00000565823 2178 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC092747.4-201ENST00000620519 1861 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 SNORA70.6-201ENST00000383934 134 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU6-171P-201ENST00000384354 107 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.485-201ENST00000384395 102 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 SNORD56.6-201ENST00000384569 71 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 Y_RNA.562-201ENST00000384695 113 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU6-33P-201ENST00000384793 107 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 ENSAP1-201ENST00000392855 326 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU2-50P-201ENST00000410494 143 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU6-603P-201ENST00000411403 107 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AL355433.1-201ENST00000422804 300 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 MRPS18CP6-201ENST00000423587 223 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 PSMA2P3-201ENST00000429685 675 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 HMGB1P9-201ENST00000429856 646 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 FTH1P2-201ENST00000466086 412 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC092754.1-201ENST00000472975 479 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RPS4XP1-201ENST00000482189 787 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 CR383656.1-201ENST00000484916 377 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC022447.4-201ENST00000504053 364 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU6-941P-201ENST00000516346 108 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNU6-352P-201ENST00000516908 107 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RNA5SP373-201ENST00000517271 95 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC109446.1-201ENST00000566172 220 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AC110743.1-201ENST00000584870 478 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 IGHV3-29-201ENST00000604817 344 ntBASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP3Q9Y6I4 AL731566.1-201ENST00000620490 1937 ntBASIC5.65□□□□□ -1.51
USP3Q9Y6I4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
USP3Q9Y6I4 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 PHKBP1-201ENST00000450951 1951 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AL078621.3-201ENST00000623707 2042 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 Y_RNA.14-201ENST00000362415 103 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 U3.2-201ENST00000362981 210 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNU6-701P-201ENST00000384059 107 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNU6-842P-201ENST00000384269 107 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 CYB5AP4-201ENST00000396692 399 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MIR548M-201ENST00000408260 86 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MIR1178-201ENST00000408396 91 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RN7SKP126-201ENST00000411143 300 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC108032.1-201ENST00000416706 207 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC099336.2-201ENST00000422457 254 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC093655.2-201ENST00000425735 631 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AL163193.1-201ENST00000444895 788 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 GAPDHP27-201ENST00000447427 1020 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC007967.1-201ENST00000455422 1159 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC099560.2-201ENST00000457554 255 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RPL39P38-201ENST00000467018 153 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 MTCO3P44-201ENST00000510977 541 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNU6-120P-201ENST00000516077 103 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNA5SP34-201ENST00000516887 130 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNU7-4P-201ENST00000516961 62 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC040926.1-201ENST00000530195 238 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AP003385.6-201ENST00000531603 374 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 OR10G5P-201ENST00000532733 358 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RPL10P14-201ENST00000565265 298 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC084783.1-201ENST00000565846 910 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC108738.1-201ENST00000603703 237 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 RNA5SP439-201ENST00000617595 124 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 AC074101.1-201ENST00000637861 241 ntBASIC5.64□□□□□ -1.51
USP3Q9Y6I4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
USP3Q9Y6I4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 139.7 ms