Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 TXNP7-201ENST00000406296 293 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RN7SKP33-201ENST00000410942 340 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AL353748.1-201ENST00000440753 474 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RPL23AP43-201ENST00000446445 471 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AL049714.1-201ENST00000466686 347 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RPS3AP17-201ENST00000472594 777 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RPL35P6-201ENST00000490024 372 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RPS27AP13-201ENST00000498403 237 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 SNORA31.22-201ENST00000517204 135 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AL391156.1-201ENST00000554965 554 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 MIR3936-201ENST00000584304 110 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC006116.10-201ENST00000591836 581 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AP000860.1-201ENST00000605250 559 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 MIR98-201ENST00000606724 119 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RNU4-89P-201ENST00000607443 133 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC087241.4-201ENST00000612441 480 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 AC106871.1-201ENST00000568324 3102 ntBASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC9Q9Y3X0 RLIMP1-201ENST00000339626 1680 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RNU4-1-201ENST00000363925 141 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RNU6-259P-201ENST00000383999 107 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 MIR7-3-201ENST00000384898 110 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RNA5SP129-201ENST00000410276 118 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC093578.1-201ENST00000415219 368 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 PIGFP2-201ENST00000421400 651 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC007283.2-201ENST00000424739 197 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 ISCUP1-201ENST00000454451 448 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AL359385.1-201ENST00000456509 365 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AL049874.2-201ENST00000492636 288 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 KCTD9P5-201ENST00000504141 1170 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RNU6-390P-201ENST00000516259 103 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RNA5SP309-201ENST00000516670 106 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC005868.1-201ENST00000536421 331 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 OR4H12P-201ENST00000556269 907 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RPL7P50-201ENST00000600588 727 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AL160281.1-201ENST00000605307 311 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AP002826.1-201ENST00000608835 315 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC004825.2-201ENST00000616634 455 ntBASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC9Q9Y3X0 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC125257.1-201ENST00000560400 2930 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC110754.1-201ENST00000399740 601 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC008850.1-201ENST00000427546 362 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 RPL7L1P10-201ENST00000427790 463 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AL133547.1-201ENST00000448546 220 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 NANOGP10-201ENST00000453325 895 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC011825.1-201ENST00000484967 388 ntBASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
CCDC9Q9Y3X0 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms