Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-506P-201ENST00000516553 94 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AP003497.1-201ENST00000528472 562 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AL157394.1-201ENST00000562983 1224 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC034268.2-201ENST00000571784 482 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 UBE2L4-201ENST00000587688 464 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC079587.1-201ENST00000603846 277 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC110741.2-201ENST00000605278 268 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 RNU6-87P-201ENST00000607561 108 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC126118.1-201ENST00000607744 628 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC105429.2-201ENST00000610567 517 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 U6atac.1-201ENST00000616025 117 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC099669.2-201ENST00000616549 437 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC072046.2-201ENST00000618366 268 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC009159.1-201ENST00000618386 642 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 AL158801.5-201ENST00000623123 465 ntBASIC4.1□□□□□ -1.75
VPS4AQ9UN37 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
VPS4AQ9UN37 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 RNU6-853P-201ENST00000364306 107 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 RNU6-761P-201ENST00000384148 107 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 RNU6-1207P-201ENST00000384343 107 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 Y_RNA.548-201ENST00000384656 105 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC006548.1-201ENST00000427470 102 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 OR51AB1P-201ENST00000429046 620 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MTATP6P13-201ENST00000438531 667 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 SNORD121B-201ENST00000458838 81 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 snoU109.4-201ENST00000458953 143 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AL132838.2-201ENST00000492041 314 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 RPL9P6-201ENST00000492764 598 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC108145.1-201ENST00000503770 153 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC114967.1-201ENST00000504890 259 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC108078.1-201ENST00000508073 725 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC024224.1-201ENST00000538284 609 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC007424.1-203ENST00000554613 687 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 ZNF519P2-201ENST00000557032 169 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC137800.2-201ENST00000574375 120 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MIR3682-201ENST00000581338 84 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MIR4444-1-201ENST00000581696 74 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MIR4801-201ENST00000582704 82 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MIR4444-2-201ENST00000584390 74 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 VN1R79P-201ENST00000593540 513 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC020914.4-201ENST00000597690 277 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AL355812.1-201ENST00000603215 216 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 MIR432-201ENST00000606207 94 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC091925.2-201ENST00000625059 256 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 CR381572.1-201ENST00000625098 102 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 AC093536.2-201ENST00000565257 1406 ntBASIC4.09□□□□□ -1.75
VPS4AQ9UN37 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
VPS4AQ9UN37 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS4AQ9UN37 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.09□□□□□ -1.76
VPS4AQ9UN37 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS4AQ9UN37 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
VPS4AQ9UN37 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.09□□□□□ -1.76
VPS4AQ9UN37 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 OR5P1P-201ENST00000299512 925 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RN7SKP44-201ENST00000363602 316 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RNA5SP175-201ENST00000364275 119 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 RNA5SP283-201ENST00000365604 119 ntBASIC4.08□□□□□ -1.76
VPS4AQ9UN37 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.08□□□□□ -1.76
VPS4AQ9UN37 AC097374.1-203ENST00000400783 485 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms