Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA1Q96BD8 AC024220.1-201ENST00000603675 484 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AC114878.2-201ENST00000604863 1251 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AC013244.3-201ENST00000605614 388 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 SNORA51-201ENST00000606420 132 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AC005344.1-201ENST00000613391 459 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AL607023.1-201ENST00000620045 248 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC3.98□□□□□ -1.77
SKA1Q96BD8 AL356596.1-201ENST00000624230 379 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AC007490.1-201ENST00000624321 703 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 PCMTD1P7-201ENST00000634506 357 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 AP004289.2-201ENST00000444413 1457 ntBASIC3.98□□□□□ -1.77
SKA1Q96BD8 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SKA1Q96BD8 ZNF542P-204ENST00000482727 1305 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 RNU6-114P-201ENST00000384704 105 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 RPS4XP3-201ENST00000398541 413 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 RN7SKP156-201ENST00000410308 342 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 RNA5SP44-201ENST00000410446 133 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AL356867.1-201ENST00000429623 299 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AL445584.1-201ENST00000431451 330 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 LSM1P1-201ENST00000438629 273 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 HMGN2P13-201ENST00000476476 274 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 ACTR3P3-201ENST00000480448 893 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 RPS4XP15-201ENST00000489210 795 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 RPL7P24-201ENST00000493052 752 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 RN7SL323P-201ENST00000494712 295 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 AC022447.3-201ENST00000506865 495 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 AC090888.2-201ENST00000559765 1144 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 AC009464.1-201ENST00000615731 469 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.97□□□□□ -1.77
SKA1Q96BD8 SDAD1P2-201ENST00000441308 2028 ntBASIC3.97□□□□□ -1.77
SKA1Q96BD8 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SKA1Q96BD8 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
SKA1Q96BD8 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
SKA1Q96BD8 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
SKA1Q96BD8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 MIR1305-201ENST00000408300 86 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 RNU6-1077P-201ENST00000410506 102 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL139247.1-201ENST00000422768 325 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 PPP1R11P2-201ENST00000423543 382 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL590383.1-201ENST00000428602 75 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL358472.1-201ENST00000431295 329 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 GOT2P5-201ENST00000433995 546 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL117351.1-201ENST00000438864 766 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL591503.2-201ENST00000442314 1005 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 NOTCH2P1-201ENST00000443481 624 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AP000542.1-201ENST00000448473 371 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 RPL31P60-201ENST00000478450 367 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 HSPE1P6-201ENST00000479457 291 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 RPL30P14-201ENST00000482744 348 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 HMGN1P11-201ENST00000508668 303 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 POU5F1P7-201ENST00000508759 541 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 RNU6-1231P-201ENST00000517185 103 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 MRPS36P3-201ENST00000519284 130 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 TRMT10BP1-201ENST00000519377 943 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 EEF1A1P37-201ENST00000522748 715 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 MIR4999-201ENST00000585029 91 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 AC024560.3-201ENST00000608482 349 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.96□□□□□ -1.78
SKA1Q96BD8 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SKA1Q96BD8 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.96□□□□□ -1.78
SKA1Q96BD8 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
SKA1Q96BD8 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.96□□□□□ -1.78
SKA1Q96BD8 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SKA1Q96BD8 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.95□□□□□ -1.78
SKA1Q96BD8 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.95□□□□□ -1.78
SKA1Q96BD8 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.95□□□□□ -1.78
SKA1Q96BD8 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms