Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SAGE2P-201ENST00000420011 2126 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC108075.1-201ENST00000424692 529 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 FAR2P4-202ENST00000425399 584 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 USP9YP16-201ENST00000430287 407 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 RPS11P7-201ENST00000442125 465 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 USP9YP23-201ENST00000455085 407 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC092451.1-201ENST00000480211 153 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 DEFB109F-201ENST00000491870 277 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 HMGB1P30-201ENST00000492455 606 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC026782.1-201ENST00000512952 449 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 Y_RNA.661-201ENST00000516003 99 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AP001922.4-201ENST00000526967 290 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 MIR4489-201ENST00000578869 62 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AL669831.4-202ENST00000590817 238 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AL354984.3-201ENST00000604803 325 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 MIR6768-201ENST00000610734 72 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC092608.2-201ENST00000624427 218 ntBASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
UBE3DQ7Z6J8 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 DDX10P1-201ENST00000448545 1933 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC020633.1-201ENST00000468439 2247 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC093849.1-201ENST00000563631 2209 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC005332.5-201ENST00000591222 2919 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AL672167.1-205ENST00000641112 3080 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-1222P-201ENST00000384615 107 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 SNORD70.1-201ENST00000391007 85 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC008267.5-201ENST00000424928 265 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 HMGB1P12-201ENST00000438594 598 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 MTCO3P45-201ENST00000443036 613 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC008481.1-201ENST00000463278 396 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 PPIAP21-201ENST00000464473 501 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RN7SL189P-201ENST00000468631 289 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RPS21P4-201ENST00000487122 248 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC110794.1-201ENST00000505816 425 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 MTCO3P44-201ENST00000510977 541 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC021146.3-201ENST00000511911 260 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RNU6-470P-201ENST00000515954 104 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC022884.2-201ENST00000578535 580 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC113195.1-201ENST00000579952 141 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RN7SL708P-201ENST00000580952 299 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC009229.3-201ENST00000608056 282 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC006329.2-201ENST00000611491 394 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 MIR6130-201ENST00000619419 109 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 MIR6886-201ENST00000619864 61 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AC007998.5-201ENST00000622938 237 ntBASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
UBE3DQ7Z6J8 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
UBE3DQ7Z6J8 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
UBE3DQ7Z6J8 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
UBE3DQ7Z6J8 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
UBE3DQ7Z6J8 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 175.8 ms