Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AL162389.1-201ENST00000449233 177 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 ST13P14-201ENST00000474095 734 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 NCOR1P1-202ENST00000486162 291 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC079203.1-201ENST00000487972 404 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC118282.2-201ENST00000508739 374 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC010460.2-201ENST00000509054 677 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC109471.1-201ENST00000511631 612 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC023632.1-201ENST00000518463 375 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AP001646.1-201ENST00000527936 915 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 DEFB130C-202ENST00000530001 230 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 SNORD53-201ENST00000579969 78 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC079089.3-201ENST00000603094 673 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC092628.2-201ENST00000622492 339 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC092608.2-201ENST00000624427 218 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
NPHP3Q7Z494 AC095050.2-201ENST00000510748 1458 ntBASIC3.88□□□□□ -1.79
NPHP3Q7Z494 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 SNORD56.3-201ENST00000363507 71 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 RNU6-374P-201ENST00000364146 108 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 Y_RNA.472-201ENST00000384322 102 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 SNORD116-12-201ENST00000384468 92 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 RNU6-441P-201ENST00000384545 106 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 RPL31P2-201ENST00000413849 377 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 RAC1P8-201ENST00000427086 527 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC096632.1-201ENST00000427395 310 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 MTCYBP32-201ENST00000427945 1084 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AL138799.3-201ENST00000438968 350 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 MRPL42P4-201ENST00000453267 443 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 HMGN3P1-201ENST00000453847 193 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC068305.1-201ENST00000497406 726 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 RNU2-58P-201ENST00000516403 183 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC034229.4-201ENST00000607861 441 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC091046.2-201ENST00000620775 665 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AC022509.4-201ENST00000621404 572 ntBASIC3.87□□□□□ -1.79
NPHP3Q7Z494 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
NPHP3Q7Z494 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 U3.11-201ENST00000364476 212 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 MTCO2P31-201ENST00000402702 684 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 NANOGP5-201ENST00000424456 877 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 B3GNT2P1-201ENST00000434960 952 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 Z80107.1-201ENST00000436830 412 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 Z99714.1-201ENST00000450463 807 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 NF1P3-201ENST00000457709 450 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 RNU7-170P-201ENST00000459303 61 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 RPS27P29-201ENST00000463110 252 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC092045.1-201ENST00000495716 1231 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC078918.1-201ENST00000498515 228 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 MTCO1P30-201ENST00000515244 580 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC104057.1-201ENST00000515547 497 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 IGKV2D-36-201ENST00000518643 226 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 MTND2P32-201ENST00000521584 1038 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 EEF1A1P37-201ENST00000522748 715 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AP001207.1-201ENST00000524051 481 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AL035078.2-201ENST00000533832 326 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 OR8K4P-201ENST00000534608 872 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC092470.1-201ENST00000546187 132 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC074051.3-201ENST00000570238 358 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC010928.3-201ENST00000587712 541 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC3.86□□□□□ -1.79
NPHP3Q7Z494 RPP40P2-201ENST00000603596 712 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC009974.1-201ENST00000608881 455 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AL450489.1-201ENST00000612071 468 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AL158163.2-201ENST00000619110 700 ntBASIC3.86□□□□□ -1.79
NPHP3Q7Z494 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms