Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
CCDC40Q4G0X9 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RN7SKP58-201ENST00000411010 305 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC093151.1-201ENST00000427711 313 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 MTATP6P4-201ENST00000427725 675 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 OR2AS1P-201ENST00000427827 319 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC005300.1-201ENST00000428401 373 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AL353705.1-201ENST00000433468 480 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RPL23AP74-201ENST00000437246 471 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC092427.1-201ENST00000439177 601 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 Z75741.1-201ENST00000446793 314 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RFC5P1-201ENST00000454419 874 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RPS15AP17-201ENST00000470598 390 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC109925.1-201ENST00000478069 331 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RNU6-1225P-201ENST00000516336 65 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 RN7SKP31-201ENST00000516354 278 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC010376.1-201ENST00000522101 334 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 MAGOH2P-202ENST00000584384 429 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AL606834.2-201ENST00000602954 668 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC019176.2-201ENST00000611579 315 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC138932.5-201ENST00000617759 563 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 MIR7975-201ENST00000619350 68 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC084035.1-201ENST00000634543 607 ntBASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
CCDC40Q4G0X9 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 SNORD15B-201ENST00000384714 146 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 SNORA40.2-201ENST00000390847 128 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 Z75741.2-201ENST00000417272 1167 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 MTCO1P39-201ENST00000426148 480 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC091862.1-201ENST00000438016 1100 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC006028.1-201ENST00000438379 402 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 PRSS3P4-201ENST00000453323 162 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 Z82190.1-201ENST00000454534 490 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC026410.2-201ENST00000460281 156 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC091153.1-201ENST00000466297 402 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 CCNG2P1-201ENST00000549521 1000 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC009220.3-201ENST00000604318 586 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC024257.5-201ENST00000612739 531 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC012314.7-201ENST00000619693 93 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC099506.2-201ENST00000623074 221 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AL356585.4-201ENST00000623078 1229 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC013437.2-201ENST00000639587 677 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 OR8B1P-202ENST00000641132 1178 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 AC109315.1-201ENST00000584143 1347 ntBASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC40Q4G0X9 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 RNU6-1155P-201ENST00000363554 107 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 SNORD67-201ENST00000390833 111 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 U3.19-201ENST00000390893 196 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 MRPS36P1-201ENST00000421291 307 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AL389915.1-201ENST00000422463 466 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC005326.1-201ENST00000429197 123 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AL645638.1-201ENST00000440519 361 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC093392.2-201ENST00000450682 337 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC108734.3-201ENST00000481241 1165 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 WBP1LP4-201ENST00000505043 344 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms