Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 SNORA48.5-201ENST00000391143 135 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 RNA5SP274-201ENST00000410484 108 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 RN7SKP123-201ENST00000410732 291 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 RNU2-71P-201ENST00000411395 189 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AL449283.1-202ENST00000418249 604 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 RPL7P44-201ENST00000424827 742 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
SHMT2P34897 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC2.95□□□□□ -1.94
SHMT2P34897 AL445669.2-201ENST00000454425 421 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AP004217.1-201ENST00000480579 346 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 OR2A20P-203ENST00000498397 1268 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 RNU6-1073P-201ENST00000517182 106 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC091163.3-201ENST00000518269 1144 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.95□□□□□ -1.94
SHMT2P34897 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.95□□□□□ -1.94
SHMT2P34897 AP001189.2-201ENST00000527320 189 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC109635.4-202ENST00000531666 412 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC2.95□□□□□ -1.94
SHMT2P34897 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC2.95□□□□□ -1.94
SHMT2P34897 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.95□□□□□ -1.94
SHMT2P34897 AC055876.1-202ENST00000567053 138 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC2.95□□□□□ -1.94
SHMT2P34897 AC005951.1-201ENST00000576706 485 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC2.95□□□□□ -1.94
SHMT2P34897 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC2.95□□□□□ -1.94
SHMT2P34897 BNIP3P27-201ENST00000599991 412 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC069431.2-201ENST00000604149 1099 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC069545.1-201ENST00000605671 358 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AL590282.1-201ENST00000610379 1136 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 AC091953.5-201ENST00000622919 233 ntBASIC2.95□□□□□ -1.94
SHMT2P34897 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.95□□□□□ -1.94
SHMT2P34897 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.95□□□□□ -1.94
SHMT2P34897 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC000403.1-201ENST00000613696 3585 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT2P34897 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 RNU6-1249P-201ENST00000363237 111 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
SHMT2P34897 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 RAD23BP2-201ENST00000416003 1207 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 HSFY1P1-201ENST00000423928 1178 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC093151.1-201ENST00000427711 313 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AL390023.1-201ENST00000428836 262 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 VDAC1P3-201ENST00000434069 851 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 HIGD1AP11-201ENST00000438361 280 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 RSL24D1P3-201ENST00000449255 495 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 FCF1P6-201ENST00000456841 595 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 RPS20P24-201ENST00000457473 361 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 snoU13.24-201ENST00000458998 104 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 HMGB1P25-201ENST00000468402 607 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC069528.1-202ENST00000482888 637 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC079203.1-201ENST00000487972 404 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 MTCYBP16-201ENST00000509187 1129 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 RNU6-1261P-201ENST00000517194 104 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC009812.2-201ENST00000517657 457 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 LRRC6P1-201ENST00000532188 885 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC125611.1-201ENST00000549563 229 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC2.94□□□□□ -1.94
SHMT2P34897 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 MIR3912-201ENST00000577566 105 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 VN1R83P-201ENST00000595685 445 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC012119.1-201ENST00000603184 222 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC128687.1-201ENST00000605304 619 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC004832.5-201ENST00000608677 401 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC023158.2-201ENST00000614876 543 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.94□□□□□ -1.94
SHMT2P34897 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC2.94□□□□□ -1.94
SHMT2P34897 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.94□□□□□ -1.94
SHMT2P34897 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC2.94□□□□□ -1.94
SHMT2P34897 GDI2P1-201ENST00000429312 1336 ntBASIC2.93□□□□□ -1.94
SHMT2P34897 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
SHMT2P34897 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
SHMT2P34897 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
SHMT2P34897 AC244517.1-201ENST00000606030 2086 ntBASIC2.93□□□□□ -1.94
SHMT2P34897 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
SHMT2P34897 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
SHMT2P34897 RNU5D-1-201ENST00000363299 116 ntBASIC2.93□□□□□ -1.94
SHMT2P34897 MIR506-201ENST00000384998 124 ntBASIC2.93□□□□□ -1.94
SHMT2P34897 MIR122-201ENST00000385044 85 ntBASIC2.93□□□□□ -1.94
SHMT2P34897 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms