Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SNORA48.9-201ENST00000516419 162 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 RNU6-551P-201ENST00000516661 103 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC2.49□□□□□ -2.01
COL5A3P25940 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC2.49□□□□□ -2.01
COL5A3P25940 OR8X1P-201ENST00000534542 869 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 AC068790.3-201ENST00000602988 553 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 AC002064.3-201ENST00000623448 346 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 AC010297.1-201ENST00000623948 149 ntBASIC2.49□□□□□ -2.01
COL5A3P25940 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL5A3P25940 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
COL5A3P25940 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.49□□□□□ -2.01
COL5A3P25940 AC022022.1-201ENST00000430304 178 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 ATP5F1P1-201ENST00000433775 569 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 CLIC4P1-201ENST00000453177 535 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC2.48□□□□□ -2.01
COL5A3P25940 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.48□□□□□ -2.01
COL5A3P25940 AC025857.1-201ENST00000525252 377 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 OR4U1P-201ENST00000554958 912 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 VN1R80P-201ENST00000597126 338 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AC138473.1-201ENST00000605717 526 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.48□□□□□ -2.01
COL5A3P25940 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
COL5A3P25940 Y_RNA.355-201ENST00000365462 98 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 RNU6-564P-201ENST00000410983 104 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 RNA5SP270-201ENST00000411361 118 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 RNU6-603P-201ENST00000411403 107 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AL358453.1-201ENST00000422522 250 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC2.48□□□□□ -2.01
COL5A3P25940 OR4K11P-201ENST00000431829 904 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 PTGES3P5-201ENST00000455109 434 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AP000852.1-201ENST00000472460 573 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.48□□□□□ -2.01
COL5A3P25940 TRAV11-201ENST00000539512 339 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC2.48□□□□□ -2.01
COL5A3P25940 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC2.48□□□□□ -2.01
COL5A3P25940 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.48□□□□□ -2.01
COL5A3P25940 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.48□□□□□ -2.01
COL5A3P25940 AP004372.1-201ENST00000604842 844 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC2.48□□□□□ -2.01
COL5A3P25940 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.48□□□□□ -2.01
COL5A3P25940 Y_RNA.783-201ENST00000613546 102 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AL355578.1-201ENST00000607405 1328 ntBASIC2.48□□□□□ -2.01
COL5A3P25940 AC007256.1-201ENST00000392253 2765 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL5A3P25940 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.47□□□□□ -2.01
COL5A3P25940 U8.10-201ENST00000384260 133 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 MIR591-201ENST00000385290 95 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AL627390.1-201ENST00000396055 340 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.47□□□□□ -2.01
COL5A3P25940 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 MTCO3P30-201ENST00000426425 670 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.47□□□□□ -2.01
COL5A3P25940 ELOCP10-201ENST00000440624 327 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC2.47□□□□□ -2.01
COL5A3P25940 AC245517.4-201ENST00000448601 281 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC2.47□□□□□ -2.01
COL5A3P25940 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.47□□□□□ -2.01
COL5A3P25940 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.47□□□□□ -2.01
COL5A3P25940 snoU13.18-201ENST00000459483 104 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC2.47□□□□□ -2.01
COL5A3P25940 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.47□□□□□ -2.01
COL5A3P25940 TMEM248P1-201ENST00000510579 951 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL5A3P25940 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.47□□□□□ -2.01
COL5A3P25940 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.47□□□□□ -2.01
COL5A3P25940 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
COL5A3P25940 AC060766.3-201ENST00000591442 263 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AC007687.1-201ENST00000602704 304 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 SNRPGP19-201ENST00000603826 189 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 ELOCP34-201ENST00000604436 327 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 AL590410.1-201ENST00000617925 333 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.47□□□□□ -2.01
COL5A3P25940 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.47□□□□□ -2.01
COL5A3P25940 MTND5P7-201ENST00000413558 1798 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 AC240504.1-201ENST00000395709 845 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 RPL23AP39-201ENST00000415533 405 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC2.46□□□□□ -2.02
COL5A3P25940 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.46□□□□□ -2.02
COL5A3P25940 RPL31P53-201ENST00000457065 348 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 HMGB3P30-201ENST00000457863 606 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 AC008571.1-201ENST00000467232 300 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
COL5A3P25940 HMGB3P15-201ENST00000507326 574 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC2.46□□□□□ -2.02
COL5A3P25940 AC010226.1-203ENST00000515570 765 ntTSL 2 BASIC2.46□□□□□ -2.02
COL5A3P25940 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.46□□□□□ -2.02
COL5A3P25940 ZNF192P1-203ENST00000565888 810 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 MIR3683-201ENST00000580847 82 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 MIR3670-2-201ENST00000582974 65 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 MIR3670-1-201ENST00000584160 65 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 MIR3670-3-201ENST00000584855 65 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC2.46□□□□□ -2.02
COL5A3P25940 MIR3670-4-201ENST00000612260 65 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
COL5A3P25940 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
COL5A3P25940 AC006378.2-201ENST00000623178 2476 ntBASIC2.46□□□□□ -2.02
COL5A3P25940 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
COL5A3P25940 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
COL5A3P25940 RNA5SP167-201ENST00000365461 116 ntBASIC2.45□□□□□ -2.02
COL5A3P25940 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms