Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 RNU4-36P-201ENST00000364294 144 ntBASIC9.47□□□□□ -0.89
MSH5O43196 SNRPD3-202ENST00000402849 567 ntTSL 2 BASIC9.47□□□□□ -0.89
MSH5O43196 AL117342.1-201ENST00000404861 406 ntBASIC9.47□□□□□ -0.89
MSH5O43196 SNRPEP6-201ENST00000407465 277 ntBASIC9.47□□□□□ -0.89
MSH5O43196 RNA5SP44-201ENST00000410446 133 ntBASIC9.47□□□□□ -0.89
MSH5O43196 RNU6-141P-201ENST00000410499 105 ntBASIC9.47□□□□□ -0.89
MSH5O43196 AC002075.2-201ENST00000425207 252 ntBASIC9.47□□□□□ -0.89
MSH5O43196 RN7SL834P-201ENST00000461450 286 ntBASIC9.47□□□□□ -0.89
MSH5O43196 AC005972.2-201ENST00000604690 348 ntBASIC9.47□□□□□ -0.89
MSH5O43196 AC145423.2-201ENST00000610631 239 ntBASIC9.47□□□□□ -0.89
MSH5O43196 MIR7109-201ENST00000613748 65 ntBASIC9.47□□□□□ -0.89
MSH5O43196 MIR6849-201ENST00000618543 69 ntBASIC9.47□□□□□ -0.89
MSH5O43196 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 AC007993.1-201ENST00000621298 2430 ntBASIC9.47□□□□□ -0.89
MSH5O43196 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC9.47□□□□□ -0.89
MSH5O43196 AP003486.1-201ENST00000525716 3994 ntBASIC9.47□□□□□ -0.89
MSH5O43196 AC010889.1-201ENST00000566193 2666 ntBASIC9.47□□□□□ -0.89
MSH5O43196 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC9.47□□□□□ -0.89
MSH5O43196 ZNF605-202ENST00000360187 9340 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC9.46□□□□□ -0.89
MSH5O43196 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC9.46□□□□□ -0.89
MSH5O43196 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 COL21A1-203ENST00000370819 4094 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 LRRC37A-201ENST00000320254 5177 ntAPPRIS P2 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 CTNNA1P1-201ENST00000515849 2728 ntBASIC9.46□□□□□ -0.89
MSH5O43196 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
MSH5O43196 RNA5SP114-201ENST00000363780 113 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RNU6-1264P-201ENST00000383891 107 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RNU6-1293P-201ENST00000384077 107 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RNU6-644P-201ENST00000391155 98 ntBASIC9.46□□□□□ -0.9
MSH5O43196 AL031003.1-201ENST00000404229 172 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RNU2-55P-201ENST00000411146 174 ntBASIC9.46□□□□□ -0.9
MSH5O43196 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC9.46□□□□□ -0.9
MSH5O43196 PTCSC2-201ENST00000430058 204 ntTSL 2 BASIC9.46□□□□□ -0.9
MSH5O43196 CYCSP44-201ENST00000448560 313 ntBASIC9.46□□□□□ -0.9
MSH5O43196 MYL6P4-201ENST00000477911 453 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RN7SL332P-201ENST00000482163 254 ntBASIC9.46□□□□□ -0.9
MSH5O43196 RNU6-156P-201ENST00000621869 107 ntBASIC9.46□□□□□ -0.9
MSH5O43196 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC9.46□□□□□ -0.9
MSH5O43196 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
MSH5O43196 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
MSH5O43196 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC9.46□□□□□ -0.9
MSH5O43196 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
MSH5O43196 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC9.46□□□□□ -0.9
MSH5O43196 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
MSH5O43196 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC9.45□□□□□ -0.9
MSH5O43196 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
MSH5O43196 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC9.45□□□□□ -0.9
MSH5O43196 SLC30A8-205ENST00000519688 5242 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 POGZ-218ENST00000531094 4415 ntAPPRIS ALT1 TSL 2 BASIC9.45□□□□□ -0.9
MSH5O43196 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 SNORA70.5-201ENST00000365519 135 ntBASIC9.45□□□□□ -0.9
MSH5O43196 Y_RNA.432-201ENST00000384087 111 ntBASIC9.45□□□□□ -0.9
MSH5O43196 RNU6-616P-201ENST00000384353 107 ntBASIC9.45□□□□□ -0.9
MSH5O43196 RPSAP72-201ENST00000407020 358 ntBASIC9.45□□□□□ -0.9
MSH5O43196 AP000431.1-201ENST00000424219 469 ntTSL 3 BASIC9.45□□□□□ -0.9
MSH5O43196 AC108075.1-201ENST00000424692 529 ntBASIC9.45□□□□□ -0.9
MSH5O43196 CYCSP6-201ENST00000434498 302 ntBASIC9.45□□□□□ -0.9
MSH5O43196 RPL31P41-201ENST00000477967 372 ntBASIC9.45□□□□□ -0.9
MSH5O43196 AC098583.1-201ENST00000480875 255 ntBASIC9.45□□□□□ -0.9
MSH5O43196 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC9.45□□□□□ -0.9
MSH5O43196 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC9.45□□□□□ -0.9
MSH5O43196 HOTTIP_4.1-201ENST00000618195 165 ntBASIC9.45□□□□□ -0.9
MSH5O43196 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC9.45□□□□□ -0.9
MSH5O43196 AC241585.2-209ENST00000638217 143 ntBASIC9.45□□□□□ -0.9
MSH5O43196 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC9.45□□□□□ -0.9
MSH5O43196 AP000547.3-204ENST00000588548 2523 ntBASIC9.45□□□□□ -0.9
MSH5O43196 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
MSH5O43196 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
MSH5O43196 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC9.44□□□□□ -0.9
MSH5O43196 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC9.44□□□□□ -0.9
MSH5O43196 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
MSH5O43196 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC9.44□□□□□ -0.9
MSH5O43196 XRCC5-201ENST00000392132 3428 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
MSH5O43196 RNU6-414P-201ENST00000363705 104 ntBASIC9.44□□□□□ -0.9
MSH5O43196 Y_RNA.587-201ENST00000391210 103 ntBASIC9.44□□□□□ -0.9
MSH5O43196 MIR1204-201ENST00000408388 67 ntBASIC9.44□□□□□ -0.9
MSH5O43196 OR2AH1P-201ENST00000425717 928 ntBASIC9.44□□□□□ -0.9
MSH5O43196 AL138733.2-201ENST00000431947 804 ntTSL 5 BASIC9.44□□□□□ -0.9
MSH5O43196 AL358232.1-201ENST00000448030 501 ntBASIC9.44□□□□□ -0.9
MSH5O43196 RN7SL189P-201ENST00000468631 289 ntBASIC9.44□□□□□ -0.9
MSH5O43196 AC100832.1-201ENST00000471945 383 ntBASIC9.44□□□□□ -0.9
MSH5O43196 RN7SL88P-201ENST00000480166 299 ntBASIC9.44□□□□□ -0.9
MSH5O43196 AC139453.3-201ENST00000493276 369 ntBASIC9.44□□□□□ -0.9
MSH5O43196 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC9.44□□□□□ -0.9
MSH5O43196 MIR4312-201ENST00000579909 76 ntBASIC9.44□□□□□ -0.9
MSH5O43196 AL137843.1-201ENST00000605078 385 ntBASIC9.44□□□□□ -0.9
MSH5O43196 AL359091.2-201ENST00000609303 556 ntBASIC9.44□□□□□ -0.9
MSH5O43196 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
MSH5O43196 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
MSH5O43196 PHKBP1-201ENST00000450951 1951 ntBASIC9.44□□□□□ -0.9
MSH5O43196 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 132 ms