Protein–RNA interactions for Protein: Q9P1Z3

HCN3, Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3, humanhuman

Predictions only

Length 774 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HCN3Q9P1Z3 AC009902.3-201ENST00000606235 2172 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 MTND5P33-201ENST00000571250 1450 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RNA5SP388-201ENST00000362584 119 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RNU2-43P-201ENST00000410306 190 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 TBCAP1-201ENST00000436520 327 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 TAF9P1-201ENST00000445421 515 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RPS17P13-201ENST00000448974 407 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RPS11P1-201ENST00000451072 473 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 HMGB3P22-202ENST00000451823 572 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RPL5P32-201ENST00000454085 879 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 TAF9P2-201ENST00000454958 515 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC112204.1-201ENST00000502591 103 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 FTH1P21-201ENST00000512179 511 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 FTH1P9-201ENST00000513251 355 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC026402.1-201ENST00000513642 170 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 OR8R1P-201ENST00000543943 764 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC009101.1-201ENST00000568135 242 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC022146.1-201ENST00000595307 847 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 VN1R85P-201ENST00000601587 426 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AP001429.1-201ENST00000602568 530 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 RN7SKP299-201ENST00000606679 301 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 AC245008.1-201ENST00000608123 476 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 FAM35DP-201ENST00000323387 2712 ntBASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
HCN3Q9P1Z3 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 SYF2-202ENST00000354361 926 ntTSL 2 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 SNORA31-201ENST00000362607 130 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 Y_RNA.46-201ENST00000362695 102 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 SNORA37-201ENST00000384504 129 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RNU6-882P-201ENST00000391025 103 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RN7SKP56-201ENST00000410513 331 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AMD1P2-201ENST00000412936 992 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC016907.1-201ENST00000419483 435 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 VDAC1P3-201ENST00000434069 851 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RPL21P89-201ENST00000444021 467 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 MTND1P9-201ENST00000453775 944 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 MTND4LP3-201ENST00000468320 276 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RPL31P13-201ENST00000484151 370 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RPL7P23-201ENST00000493874 747 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC010424.1-201ENST00000506336 297 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC017037.1-201ENST00000508460 471 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC026801.2-201ENST00000515352 425 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 FABP5P5-201ENST00000515537 406 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RN7SKP244-201ENST00000516513 307 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RNU6-1003P-201ENST00000517099 105 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 RPL12P22-201ENST00000519073 490 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AL133271.1-201ENST00000538229 291 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC007115.1-201ENST00000546853 234 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 ZNF519P3-201ENST00000557158 1032 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 AC120057.2-201ENST00000571520 271 ntBASIC3.81□□□□□ -1.8
HCN3Q9P1Z3 BNIP3P22-201ENST00000593399 556 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms