Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 LSM3P2-201ENST00000551246 273 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 NCAPGP2-201ENST00000557911 754 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC007566.2-201ENST00000603642 413 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AP001836.1-201ENST00000604675 523 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC245389.1-201ENST00000605141 529 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNU6-89P-201ENST00000606519 100 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC103710.2-201ENST00000609912 942 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AL365204.3-201ENST00000612448 685 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 ATM-230ENST00000640388 578 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC004817.4-201ENST00000602396 3625 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.387-201ENST00000383918 102 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 RPS26P8-201ENST00000393490 348 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 RNU6-1148P-201ENST00000410992 104 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 RN7SKP247-201ENST00000411094 308 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AL161631.1-201ENST00000417933 486 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AL353691.1-201ENST00000451332 387 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 RNU7-59P-201ENST00000459101 61 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 RPL23AP11-201ENST00000475260 469 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AC110792.2-201ENST00000510278 224 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AC021646.1-201ENST00000605469 484 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AL133215.3-201ENST00000609801 448 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 AL445567.2-201ENST00000618935 498 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 uc_338.11-201ENST00000619132 160 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 BX005214.3-202ENST00000619809 325 ntBASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
CCDC87Q9NVE4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.22-201ENST00000362492 102 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.394-201ENST00000383942 103 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 RNU6-39P-201ENST00000384344 107 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 Z98745.1-201ENST00000402553 494 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 ARL5AP1-201ENST00000418991 388 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AL451062.2-201ENST00000427515 271 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 TRAPPC2P3-201ENST00000443200 321 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 NIPA2P5-201ENST00000452282 464 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 Y_RNA.632-201ENST00000459189 102 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 RN7SL809P-201ENST00000482040 297 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC096576.1-201ENST00000489014 359 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC073073.1-201ENST00000493920 463 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC023424.1-201ENST00000496058 459 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 RNU6-1045P-201ENST00000516321 107 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 RNU7-51P-201ENST00000516560 62 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 IGLVIV-53-201ENST00000520107 367 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 IPO5P1-202ENST00000600039 287 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC091979.2-201ENST00000607514 214 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AL590099.1-201ENST00000615276 138 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 C2orf27A-204ENST00000623058 969 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 AP000843.1-201ENST00000624880 701 ntBASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC87Q9NVE4 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 SALL4P2-201ENST00000423288 2910 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AL031119.1-201ENST00000404707 1879 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 RNVU1-3-201ENST00000364313 161 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 RNU2-29P-201ENST00000410423 189 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AL451054.2-201ENST00000420896 202 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 RPS29P17-201ENST00000430795 166 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 AL138799.3-201ENST00000438968 350 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 SCARNA10-201ENST00000459255 330 ntBASIC5.92□□□□□ -1.46
CCDC87Q9NVE4 RPS20P21-201ENST00000466859 343 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms