Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RPS20P20-201ENST00000460498 340 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 GMFBP1-201ENST00000467831 427 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC233702.1-201ENST00000482905 502 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL163973.1-201ENST00000484753 577 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 SCARNA22-201ENST00000503991 125 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 OR7H2P-201ENST00000513483 306 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 RN7SKP46-201ENST00000515942 234 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 RNU1-6P-201ENST00000516290 144 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 IGKV1-32-201ENST00000519290 311 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC018630.1-201ENST00000541376 925 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC123904.3-201ENST00000547218 814 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 NCAPGP2-201ENST00000557911 754 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL121992.2-201ENST00000606262 256 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 TUG1_2.1-201ENST00000614234 87 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 BMS1P21-201ENST00000634565 365 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 LINC01109-201ENST00000603837 3081 ntBASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
TRIM39Q9HCM9 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 SNORD3H-201ENST00000384486 214 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 MIR135A2-201ENST00000384854 100 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL354719.1-201ENST00000406535 843 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 RNU2-41P-201ENST00000410991 178 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 BX510359.2-201ENST00000417920 305 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL645608.4-201ENST00000423619 154 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL031584.1-201ENST00000447169 754 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC008481.1-201ENST00000463278 396 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC006967.1-201ENST00000467608 589 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 RPS23P1-201ENST00000491662 432 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC026427.2-201ENST00000506228 536 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 ARL2BPP2-201ENST00000550907 489 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL121603.1-201ENST00000553815 142 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 FGF7P1-201ENST00000582820 288 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.6-201ENST00000603753 252 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.11-201ENST00000604059 253 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC008162.1-201ENST00000604718 254 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.1-201ENST00000604752 252 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.5-201ENST00000605253 252 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.12-201ENST00000605291 253 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.8-201ENST00000605353 252 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AL670379.7-201ENST00000605823 252 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 uc_338.11-201ENST00000619132 160 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC079684.1-201ENST00000621405 437 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC243312.2-201ENST00000623340 601 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 U6.114-201ENST00000636407 96 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 EXOC5P1-201ENST00000510543 1969 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 AC025031.4-201ENST00000621248 3271 ntBASIC4.74□□□□□ -1.65
TRIM39Q9HCM9 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AL354685.2-201ENST00000448218 1447 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 Y_RNA.86-201ENST00000363020 111 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 RNU6-179P-201ENST00000363350 107 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 RNU5E-6P-201ENST00000365574 115 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 AL583834.1-201ENST00000406943 343 ntBASIC4.73□□□□□ -1.65
TRIM39Q9HCM9 RNU2-36P-201ENST00000410361 191 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms