Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 RNU6-216P-201ENST00000363282 104 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RNA5SP399-201ENST00000364003 117 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RNU6-501P-201ENST00000364072 100 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 Y_RNA.372-201ENST00000365599 102 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 Y_RNA.450-201ENST00000384198 113 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RNU6-1011P-201ENST00000384668 107 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 MIR506-201ENST00000384998 124 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 MIR92A2-201ENST00000385299 75 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AL590002.1-201ENST00000406554 418 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 CCNG1P1-201ENST00000406783 885 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AL136133.1-201ENST00000413694 376 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC233981.1-201ENST00000423224 461 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RWDD4P2-201ENST00000426392 563 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 YME1L1P1-201ENST00000429435 297 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC092427.1-201ENST00000439177 601 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 GDI2P2-201ENST00000445131 608 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC239809.1-201ENST00000450470 217 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 MTND3P10-201ENST00000450967 341 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RAD23BP3-201ENST00000454157 1152 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC069499.1-201ENST00000489433 509 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 HMGB1P28-201ENST00000507778 552 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RPL7L1P13-201ENST00000511702 739 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 SNORA48.10-201ENST00000516965 160 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 SLC2A13P1-201ENST00000531560 322 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AP002453.2-201ENST00000533503 320 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 CENPUP2-201ENST00000555897 1186 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC009101.1-201ENST00000568135 242 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC006504.3-201ENST00000586818 523 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC005034.5-201ENST00000604219 466 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC107214.2-201ENST00000608204 634 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 AC138649.3-201ENST00000622154 254 ntBASIC4.09□□□□□ -1.75
EBF3Q9H4W6 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
EBF3Q9H4W6 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC4.09□□□□□ -1.76
EBF3Q9H4W6 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
EBF3Q9H4W6 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
EBF3Q9H4W6 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.09□□□□□ -1.76
EBF3Q9H4W6 AC025125.1-201ENST00000624743 1922 ntBASIC4.09□□□□□ -1.76
EBF3Q9H4W6 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 NOL8P1-201ENST00000508336 3529 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 Y_RNA.25-201ENST00000362528 102 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNU6-251P-201ENST00000363235 104 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNA5SP387-201ENST00000364226 106 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNA5SP97-201ENST00000365006 84 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNA5SP88-201ENST00000365560 109 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNU5A-6P-201ENST00000384136 116 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AC011742.1-201ENST00000431448 434 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AL118496.1-201ENST00000440201 1812 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 MTATP6P30-201ENST00000443540 664 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AC244505.5-201ENST00000443639 207 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RPL18AP17-201ENST00000455326 198 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 SNORD42A-201ENST00000459584 64 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RPS3AP17-201ENST00000472594 777 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 HMGN1P10-201ENST00000474557 553 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 ACTR3BP4-201ENST00000503033 1244 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 SNX5P1-201ENST00000505757 1041 ntBASIC4.08□□□□□ -1.76
EBF3Q9H4W6 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.08□□□□□ -1.76
EBF3Q9H4W6 RNU6-875P-201ENST00000516488 106 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 149.6 ms