Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL603755.1-201ENST00000619504 163 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AL359715.5-201ENST00000623431 443 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC079248.2-201ENST00000623779 326 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AC079228.1-201ENST00000624774 1049 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 MIR3651-201ENST00000630427 90 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 ANKRD62P1-201ENST00000434304 1623 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 CEP170P1-201ENST00000502249 4587 ntBASIC3.48□□□□□ -1.85
CCDC3Q9BQI4 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RNU6-989P-201ENST00000362756 107 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RNU1-33P-201ENST00000364249 162 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RNU4-72P-201ENST00000410754 173 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RPL23AP39-201ENST00000415533 405 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 DBIP2-201ENST00000419076 262 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AL159169.1-201ENST00000421119 127 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 PSMA6P3-201ENST00000428242 164 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AL590233.1-201ENST00000430017 456 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 ATP5JP1-201ENST00000431631 322 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 MTND1P26-201ENST00000440488 538 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RPL23AP35-201ENST00000451906 501 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RBMY2UP-201ENST00000453474 324 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 ART2BP-201ENST00000453501 499 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AP001992.1-205ENST00000462248 379 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 HMGB1P25-201ENST00000468402 607 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC087312.1-201ENST00000471411 480 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC025518.1-201ENST00000479856 347 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC104685.1-201ENST00000502445 371 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 BTF3L4P4-201ENST00000506381 449 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 RNU6-678P-201ENST00000516832 109 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 NARSP2-201ENST00000518524 679 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC008015.1-201ENST00000555505 465 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC090616.2-202ENST00000584248 222 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AL353997.4-201ENST00000586196 166 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AL353778.1-201ENST00000603149 408 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC103710.3-201ENST00000608157 948 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC006329.2-201ENST00000611491 394 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AL732618.1-201ENST00000623251 301 ntBASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC3Q9BQI4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC3Q9BQI4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
CCDC3Q9BQI4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC116096.1-201ENST00000566804 2314 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 Y_RNA.493-201ENST00000384422 102 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RNY3P9-201ENST00000384727 106 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RNU6-952P-201ENST00000391164 108 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 HMGN2P8-201ENST00000391458 268 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 Z92545.1-201ENST00000411782 234 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 EI24P1-201ENST00000416584 867 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 MTATP6P27-201ENST00000416987 621 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AIMP1P1-201ENST00000418670 937 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC083875.1-201ENST00000419509 405 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 RPL7P30-201ENST00000420888 709 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC007742.1-201ENST00000425789 329 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AL593851.1-201ENST00000426171 157 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 ELOCP26-201ENST00000436067 329 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 UBE2FP3-201ENST00000436366 524 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 CYCSP32-201ENST00000440548 321 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 NPM1P49-201ENST00000448027 714 ntBASIC3.46□□□□□ -1.86
CCDC3Q9BQI4 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms