Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP4Q8N3C7 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
CLIP4Q8N3C7 AL122126.1-201ENST00000546905 1318 ntBASIC3.71□□□□□ -1.81
CLIP4Q8N3C7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
CLIP4Q8N3C7 AC004520.1-201ENST00000608362 1413 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 MIR181A1-201ENST00000385026 110 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RNU11-4P-201ENST00000391149 133 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RPS3AP36-201ENST00000398190 775 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RPL23AP38-201ENST00000423801 469 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RSU1P2-202ENST00000437884 485 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 HSPE1P28-201ENST00000443139 211 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 MTND6P13-201ENST00000443510 523 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 BX276092.4-201ENST00000452056 248 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 USP9YP34-201ENST00000453983 808 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC027673.1-201ENST00000456245 405 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 MTCO3P38-201ENST00000468910 766 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RPL7L1P8-201ENST00000469911 741 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AL136126.1-201ENST00000473603 402 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 HMGB1P36-201ENST00000487709 576 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RPS27AP13-201ENST00000498403 237 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC104057.1-201ENST00000515547 497 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 RNU6-1231P-201ENST00000517185 103 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 MTCO2P4-201ENST00000517968 247 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 DEFB109D-201ENST00000529497 240 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 CYCSP29-201ENST00000533731 318 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC092325.1-201ENST00000566449 554 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 HNRNPCP4-201ENST00000571636 900 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 ARF4P1-201ENST00000605447 541 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC091965.4-201ENST00000607691 587 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AL513477.2-201ENST00000607858 568 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 CR381653.2-201ENST00000624041 768 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 AC110994.2-201ENST00000635481 492 ntBASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
CLIP4Q8N3C7 ELF2P3-201ENST00000445099 1506 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC130650.2-201ENST00000618736 2403 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC007685.1-201ENST00000329806 452 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RNU6-343P-201ENST00000364709 104 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RNY4P34-201ENST00000364779 95 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 Y_RNA.296-201ENST00000364930 108 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AL024474.1-201ENST00000404655 591 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 BTBD10P2-201ENST00000404779 676 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 HSPE1P12-201ENST00000412576 301 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 BX295541.1-201ENST00000417774 250 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RPL18P10-201ENST00000425606 538 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 USP9YP18-201ENST00000425912 695 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RPL22P17-201ENST00000438729 315 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RABEPKP1-201ENST00000440529 1026 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AP000542.1-201ENST00000448473 371 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC005297.2-201ENST00000450430 606 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC003071.1-201ENST00000451219 789 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 FGF7P6-202ENST00000451282 293 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC104073.1-201ENST00000451988 151 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RPL38P1-201ENST00000460914 211 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AC007537.2-201ENST00000472093 511 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 S100A11P1-201ENST00000477525 312 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 RN7SL271P-201ENST00000487601 295 ntBASIC3.7□□□□□ -1.82
CLIP4Q8N3C7 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms