Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.38□□□□□ -1.87
PDLIM3Q53GG5 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNU6-500P-201ENST00000362349 107 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP258-201ENST00000362750 119 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNU6-1249P-201ENST00000363237 111 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP72-201ENST00000364442 117 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 SNORA73.2-201ENST00000364946 201 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 SNORD116-1-201ENST00000384335 95 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNU6-821P-201ENST00000390995 107 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 SNORA26.8-201ENST00000391306 124 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RPS3AP26-201ENST00000398259 784 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL583834.1-201ENST00000406943 343 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP129-201ENST00000410276 118 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC068533.1-201ENST00000418542 415 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 BX119904.4-201ENST00000424402 301 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 OR8F1P-201ENST00000425243 930 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC236972.1-201ENST00000433225 199 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC118469.1-201ENST00000442943 488 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AP000936.2-201ENST00000447151 681 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 MTCO1P27-201ENST00000448269 226 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 EPS15P1-201ENST00000448836 336 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC097262.1-201ENST00000452559 548 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RPL36AP13-201ENST00000457490 317 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RN7SL271P-201ENST00000487601 295 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 HMGB1P22-201ENST00000505315 124 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 MTND1P22-201ENST00000510572 951 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC024589.1-201ENST00000512207 263 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 MTND5P13-201ENST00000513046 1079 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC116347.2-201ENST00000514912 523 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 IGKV2-38-201ENST00000517443 247 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC090136.1-201ENST00000520009 240 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 COX6CP8-201ENST00000522620 226 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC110760.3-201ENST00000598794 467 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL590229.1-201ENST00000603497 542 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL354984.3-201ENST00000604803 325 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC090186.1-201ENST00000605991 572 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL031775.1-201ENST00000607014 887 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC011816.2-201ENST00000607089 556 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 FAM27D1-201ENST00000612308 341 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 PLCE1P1-201ENST00000622094 305 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AC127502.3-201ENST00000636170 1206 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 MTND5P1-201ENST00000445440 1375 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 DDX43P2-201ENST00000604753 1354 ntBASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.37□□□□□ -1.87
PDLIM3Q53GG5 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 BDP1P-201ENST00000582658 1990 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 PRO1804-201ENST00000623780 2050 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL353746.1-201ENST00000566293 6881 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNU6-50P-201ENST00000362356 103 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNU6-853P-201ENST00000364306 107 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNU4-40P-201ENST00000364351 143 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNA5SP235-201ENST00000365411 114 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNU6-744P-201ENST00000365557 107 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RNU6-1316P-201ENST00000384242 108 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MIR591-201ENST00000385290 95 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 U8.14-201ENST00000390843 143 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL138878.1-201ENST00000405131 347 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 NPM1P11-201ENST00000417106 855 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MED14P1-201ENST00000430517 648 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 MTND4P32-201ENST00000437189 1237 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 SUMO2P2-201ENST00000456482 255 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 OR6K1P-201ENST00000456766 971 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC010285.1-201ENST00000470580 392 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 AC069499.1-201ENST00000489433 509 ntBASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.36□□□□□ -1.87
PDLIM3Q53GG5 RPS27AP13-201ENST00000498403 237 ntBASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms