Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RPL31P12-201ENST00000422587 358 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC002075.2-201ENST00000425207 252 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.23□□□□□ -1.89
CDX1P47902 SKP1P1-201ENST00000438081 489 ntBASIC3.23□□□□□ -1.89
CDX1P47902 FAM103A2P-201ENST00000444122 354 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.23□□□□□ -1.89
CDX1P47902 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 RAD23BP3-201ENST00000454157 1152 ntBASIC3.23□□□□□ -1.89
CDX1P47902 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 RNU7-125P-201ENST00000458760 62 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RPL38P1-201ENST00000460914 211 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RPL7P9-201ENST00000468715 747 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AL132838.2-201ENST00000492041 314 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC004069.2-201ENST00000505438 1114 ntBASIC3.23□□□□□ -1.89
CDX1P47902 ARL2BPP6-201ENST00000512757 439 ntBASIC3.23□□□□□ -1.89
CDX1P47902 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 MTATP6P15-201ENST00000527233 835 ntBASIC3.23□□□□□ -1.89
CDX1P47902 DEFB108D-201ENST00000527787 222 ntBASIC3.23□□□□□ -1.89
CDX1P47902 OR8R1P-201ENST00000543943 764 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.23□□□□□ -1.89
CDX1P47902 MTND3P12-201ENST00000559068 328 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AC145350.1-201ENST00000567426 208 ntBASIC3.23□□□□□ -1.89
CDX1P47902 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.23□□□□□ -1.89
CDX1P47902 AC060771.1-201ENST00000582031 164 ntBASIC3.23□□□□□ -1.89
CDX1P47902 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
CDX1P47902 AC009268.2-201ENST00000621925 457 ntBASIC3.23□□□□□ -1.89
CDX1P47902 RNA5SP196-201ENST00000625967 102 ntBASIC3.23□□□□□ -1.89
CDX1P47902 U6.98-201ENST00000637157 84 ntBASIC3.23□□□□□ -1.89
CDX1P47902 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CDX1P47902 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CDX1P47902 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.23□□□□□ -1.89
CDX1P47902 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CDX1P47902 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.22□□□□□ -1.89
CDX1P47902 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CDX1P47902 SPRR2C-201ENST00000290702 219 ntBASIC3.22□□□□□ -1.89
CDX1P47902 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AC025750.1-201ENST00000399891 379 ntBASIC3.22□□□□□ -1.89
CDX1P47902 RNU6-628P-201ENST00000410675 107 ntBASIC3.22□□□□□ -1.89
CDX1P47902 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 RPL23AP39-201ENST00000415533 405 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AL445669.1-201ENST00000426743 755 ntBASIC3.22□□□□□ -1.89
CDX1P47902 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 OR4C10P-201ENST00000434991 931 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC090774.1-201ENST00000435925 246 ntBASIC3.22□□□□□ -1.89
CDX1P47902 RSU1P2-202ENST00000437884 485 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 RPL26P6-201ENST00000440913 438 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AC098824.1-201ENST00000453565 980 ntBASIC3.22□□□□□ -1.89
CDX1P47902 U3.44-201ENST00000458938 192 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC091564.1-201ENST00000464563 479 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AL672167.3-201ENST00000465951 960 ntBASIC3.22□□□□□ -1.89
CDX1P47902 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.22□□□□□ -1.89
CDX1P47902 RPS3AP50-201ENST00000487064 803 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AF213884.1-201ENST00000488102 463 ntBASIC3.22□□□□□ -1.89
CDX1P47902 RPS4XP15-201ENST00000489210 795 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC021678.1-201ENST00000505195 936 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 AL359273.1-201ENST00000510918 627 ntBASIC3.22□□□□□ -1.89
CDX1P47902 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.22□□□□□ -1.89
CDX1P47902 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 DUXAP5-201ENST00000529668 529 ntBASIC3.22□□□□□ -1.89
CDX1P47902 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.22□□□□□ -1.89
CDX1P47902 AC063950.1-201ENST00000552036 308 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AL121576.1-201ENST00000556055 276 ntBASIC3.22□□□□□ -1.89
CDX1P47902 HSPE1P5-201ENST00000561489 272 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AP005205.1-201ENST00000563503 508 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC022655.2-201ENST00000577280 318 ntBASIC3.22□□□□□ -1.89
CDX1P47902 MIR4425-201ENST00000580572 84 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AP001004.1-201ENST00000582468 324 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC090616.2-202ENST00000584248 222 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.22□□□□□ -1.89
CDX1P47902 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.22□□□□□ -1.89
CDX1P47902 AL020997.2-201ENST00000602607 184 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC004067.1-201ENST00000608733 700 ntBASIC3.22□□□□□ -1.89
CDX1P47902 AC024941.1-201ENST00000612250 334 ntBASIC3.22□□□□□ -1.89
CDX1P47902 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.22□□□□□ -1.89
CDX1P47902 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CDX1P47902 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms