Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC090572.1-201ENST00000519251 160 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC022616.3-201ENST00000523940 148 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 FAM106CP-201ENST00000582212 507 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AL592436.1-201ENST00000605135 558 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 OR10AB1P-201ENST00000609613 938 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 AC018926.3-201ENST00000618841 406 ntBASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.36
SENP3-EIF4A1A0A087X0R7 ZNF652P1-201ENST00000442420 1309 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.414-201ENST00000384011 101 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 HNRNPDLP1-201ENST00000412834 550 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC018865.2-201ENST00000423631 129 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC015724.1-201ENST00000478577 156 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RPL21P99-201ENST00000480369 423 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-1143P-201ENST00000516125 104 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC069061.3-201ENST00000582254 823 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MIR3939-201ENST00000582614 106 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC098848.2-201ENST00000588023 330 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL356218.2-201ENST00000605264 187 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC244100.1-202ENST00000621554 382 ntBASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 Y_RNA.455-201ENST00000384230 98 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL049697.2-201ENST00000403708 294 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL358176.3-201ENST00000420757 454 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC104333.2-201ENST00000422630 192 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 NRBF2P3-201ENST00000432731 865 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MIR2053-201ENST00000459295 91 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RN7SL244P-201ENST00000493405 297 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC106872.2-201ENST00000494303 480 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL035404.1-201ENST00000497982 568 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU4ATAC8P-201ENST00000516196 109 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNU6-714P-201ENST00000516963 103 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 NARSP2-201ENST00000518524 679 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 IGKV1-32-201ENST00000519290 311 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC068993.1-201ENST00000546724 589 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL022099.1-201ENST00000604551 712 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 U2.1-201ENST00000618978 145 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 uc_338.11-201ENST00000619132 160 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC6.51□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 AL022322.2-201ENST00000624072 20397 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 MAPK10-263ENST00000641052 4307 ntBASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3-EIF4A1A0A087X0R7 SAMMSON-226ENST00000642089 1582 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms