Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 HMGB1P18-201ENST00000438801 619 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 NUTF2P3-201ENST00000448540 384 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 MTND3P16-201ENST00000452205 344 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 RNU6-329P-201ENST00000459618 107 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC020593.1-201ENST00000507399 299 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC112206.3-201ENST00000514578 389 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 SNORA31.9-201ENST00000516429 84 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC040958.1-201ENST00000561102 201 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC004908.2-201ENST00000609090 574 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AL603758.1-201ENST00000618654 241 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC002550.2-201ENST00000621246 394 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 ASNSP3-201ENST00000451989 1306 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 AC004972.1-201ENST00000623934 2209 ntBASIC5.97□□□□□ -1.45
CCDC87Q9NVE4 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
CCDC87Q9NVE4 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 HSPE1P11-201ENST00000339579 310 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 RNA5SP187-201ENST00000384400 119 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 MIR19A-201ENST00000384878 82 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 COX5BP7-201ENST00000414780 274 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 CYP4F29P-201ENST00000420685 446 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 ATP5HP2-201ENST00000433885 485 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 Z95327.1-201ENST00000446082 482 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 RPL21P126-201ENST00000470049 478 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AC126389.1-201ENST00000477436 290 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 COX7A2P2-201ENST00000505291 250 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 RNU2-10P-201ENST00000516375 211 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 OR4P1P-201ENST00000530808 1136 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 CYCSP29-201ENST00000533731 318 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 MGST1-215ENST00000540056 546 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 MIR4429-201ENST00000580105 73 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 DLEU1_1.1-201ENST00000618107 190 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 AC125257.1-201ENST00000560400 2930 ntBASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 MED23-203ENST00000368058 4576 ntTSL 5 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.96□□□□□ -1.46
CCDC87Q9NVE4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNU1-94P-201ENST00000362627 173 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 MIR514A2-201ENST00000385131 88 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 MIR514A3-201ENST00000385132 88 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNU4-26P-201ENST00000410270 107 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 DPPA2P2-201ENST00000418220 897 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 MTCYBP8-201ENST00000422855 651 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AL353729.1-201ENST00000425044 720 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC018644.1-201ENST00000429934 551 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RPL34P6-201ENST00000432390 345 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 CEACAMP1-201ENST00000434624 1035 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 FTH1P1-201ENST00000437933 532 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC127537.2-201ENST00000439258 465 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RPL21P89-201ENST00000444021 467 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RAC1P7-201ENST00000445367 377 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNU7-182P-201ENST00000459009 62 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 RNU4-49P-201ENST00000516080 140 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 IGLVIV-65-201ENST00000517313 360 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 MRPL49P2-201ENST00000521066 465 ntBASIC5.95□□□□□ -1.46
CCDC87Q9NVE4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.95□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms