Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 RBPJP2-201ENST00000618187 1444 ntBASIC6.25□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 SMG1P7-201ENST00000565246 2704 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.276-201ENST00000364732 109 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.478-201ENST00000384358 107 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AL445529.1-201ENST00000398713 389 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 GPS2P1-201ENST00000411761 986 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 FAR2P2-201ENST00000413041 594 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC097713.2-201ENST00000430199 356 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AL353597.2-202ENST00000434901 373 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC073465.2-201ENST00000440938 498 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 RN7SL188P-201ENST00000469842 285 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 OARD1-209ENST00000471367 401 ntTSL 2 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC025465.3-201ENST00000510570 311 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AL121576.1-201ENST00000556055 276 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 SUB1P3-201ENST00000564581 315 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC008521.1-201ENST00000587471 187 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC012616.1-201ENST00000600294 197 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 FTX_2.1-201ENST00000618816 94 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AL512643.1-201ENST00000635735 524 ntBASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SH3RF1Q7Z6J0 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 RNU1-130P-201ENST00000363930 160 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.222-201ENST00000364264 102 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-187P-201ENST00000384139 106 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 SNORA16.2-201ENST00000390991 127 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 RNU6-516P-201ENST00000411381 104 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC093106.2-201ENST00000428212 385 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AL132765.1-201ENST00000434165 553 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 MRPS21P3-201ENST00000436696 262 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC005094.1-201ENST00000440420 368 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AL353691.1-201ENST00000451332 387 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC005008.1-201ENST00000456151 612 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 RN7SL432P-201ENST00000484057 298 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 SNORA40.14-201ENST00000516543 86 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 HMGN1P28-201ENST00000521340 364 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AP001922.4-201ENST00000526967 290 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC040926.1-201ENST00000530195 238 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AL358913.1-201ENST00000554342 121 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 RN7SL802P-201ENST00000577858 299 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 MIR548AI-201ENST00000579940 88 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 HMGN2P28-201ENST00000606102 262 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 FAM25E-202ENST00000608562 189 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 uc_338.18-201ENST00000615451 175 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC091953.3-201ENST00000623220 236 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AP002799.1-201ENST00000623552 423 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC009313.2-201ENST00000417893 1941 ntBASIC6.23□□□□□ -1.41
SH3RF1Q7Z6J0 AC100757.1-201ENST00000616872 1835 ntBASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 SAMMSON-213ENST00000641336 1521 ntBASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SH3RF1Q7Z6J0 Y_RNA.376-201ENST00000365638 108 ntBASIC6.22□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms