Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6-263P-201ENST00000363811 107 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 RNU6-1013P-201ENST00000384180 107 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RNU6-1060P-201ENST00000384664 107 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 SOD2P1-201ENST00000396543 562 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AL078599.1-201ENST00000402075 293 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RPL21P24-201ENST00000413752 448 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 AL138785.1-201ENST00000425821 331 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC093106.2-201ENST00000428212 385 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RPS27AP12-201ENST00000429552 465 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AL161722.2-201ENST00000434731 981 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 HMGB3P11-201ENST00000440127 604 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 TPT1P13-201ENST00000449760 499 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 NIPA2P5-201ENST00000452282 464 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RNU6-1208P-201ENST00000459588 107 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC092324.1-201ENST00000468671 324 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RPS27AP1-201ENST00000475545 471 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC022133.1-201ENST00000490961 571 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AL049874.2-201ENST00000492636 288 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 KLHL2P1-201ENST00000508691 521 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 HMGN1P9-201ENST00000515212 298 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC100870.1-201ENST00000522035 505 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 AL137161.1-201ENST00000532231 390 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.15□□□□□ -1.75
HOXA3O43365 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.15□□□□□ -1.75
HOXA3O43365 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXA3O43365 MIR4472-2-201ENST00000582069 67 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 POLR3GP2-201ENST00000588366 668 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AL008729.2-201ENST00000606393 473 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AP001521.2-201ENST00000608772 546 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 MIR6133-201ENST00000617057 108 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AC090971.5-201ENST00000621102 293 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 API5P2-201ENST00000397055 1498 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.15□□□□□ -1.75
HOXA3O43365 AL442639.1-201ENST00000625030 1899 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
HOXA3O43365 AP001350.1-201ENST00000601906 1524 ntBASIC4.15□□□□□ -1.75
HOXA3O43365 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.75
HOXA3O43365 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXA3O43365 MTND4P27-201ENST00000450813 1354 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXA3O43365 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
HOXA3O43365 AC104623.2-202ENST00000623477 4002 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 Y_RNA.167-201ENST00000363735 109 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 Y_RNA.579-201ENST00000390939 94 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA3O43365 RN7SKP114-201ENST00000410327 279 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 RNU4-65P-201ENST00000410473 140 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 RNU4-78P-201ENST00000410940 126 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 MTCO2P27-201ENST00000420740 428 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 BEND7P1-201ENST00000422058 457 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 MTND2P23-201ENST00000422990 651 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 RPL7P46-201ENST00000425129 740 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 BRK1P2-201ENST00000442875 223 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 MRPL48P1-201ENST00000445390 636 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 RPS29P22-201ENST00000472363 168 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXA3O43365 RN7SL244P-201ENST00000493405 297 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 MTCO1P29-201ENST00000496868 288 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA3O43365 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXA3O43365 CCDC34P1-201ENST00000507441 517 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXA3O43365 RNU6-1170P-201ENST00000515974 106 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA3O43365 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXA3O43365 AP001804.3-201ENST00000525146 880 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXA3O43365 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXA3O43365 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXA3O43365 MIR5583-1-201ENST00000580941 59 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXA3O43365 AC006254.3-201ENST00000603353 884 ntBASIC4.14□□□□□ -1.75
HOXA3O43365 AC008814.1-201ENST00000603797 406 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms