Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC022080.3-201ENST00000544433 482 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC034268.2-201ENST00000571784 482 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC006539.2-201ENST00000601729 572 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC096947.1-201ENST00000603233 470 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AL512506.2-201ENST00000624472 458 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 AC017071.1-201ENST00000564407 2204 ntBASIC3.23□□□□□ -1.89
TM9SF3Q9HD45 API5P2-201ENST00000397055 1498 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 MIR148B-201ENST00000362252 99 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RNU1-70P-201ENST00000362618 164 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 Y_RNA.500-201ENST00000384466 111 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 Y_RNA.510-201ENST00000384511 114 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 U3.29-201ENST00000391296 212 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RPL5P18-201ENST00000406671 891 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AL139098.1-201ENST00000407291 389 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC092447.6-201ENST00000414578 210 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC234064.1-201ENST00000436312 247 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC004866.2-201ENST00000438285 481 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 ISCA1P2-201ENST00000438679 421 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC009969.1-201ENST00000438726 172 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RPL32P14-201ENST00000463196 378 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 ARL4AP2-201ENST00000507378 601 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC112518.2-201ENST00000508565 425 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RNU6-27P-201ENST00000516146 107 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RNU6-1095P-201ENST00000516148 108 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 RNU6-334P-201ENST00000517072 102 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC109466.1-214ENST00000522762 583 ntTSL 2 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 MED28P6-201ENST00000558776 231 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC093519.1-201ENST00000566109 298 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC245036.5-201ENST00000596330 847 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC133794.1-201ENST00000602731 914 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 AC018692.3-201ENST00000623929 123 ntBASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
TM9SF3Q9HD45 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.21□□□□□ -1.89
TM9SF3Q9HD45 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.89
TM9SF3Q9HD45 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 SNORD56.3-201ENST00000363507 71 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 RNA5SP139-201ENST00000364340 117 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 RNU1-140P-201ENST00000365040 165 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 SNORA40.4-201ENST00000390971 128 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL356968.1-201ENST00000416622 474 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC012498.1-201ENST00000424037 437 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 UBE2D3P3-201ENST00000426992 425 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC012497.1-201ENST00000429392 575 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 RPL23AP69-201ENST00000431134 458 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 OR6K5P-201ENST00000447050 945 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL031183.1-201ENST00000457667 207 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 RPS29P12-201ENST00000460178 152 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC096576.1-201ENST00000489014 359 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 CBX3P3-201ENST00000508108 532 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC008628.1-201ENST00000508663 265 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 SNORA31.26-201ENST00000517250 137 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL136520.1-202ENST00000555494 763 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 MIR4513-201ENST00000581077 86 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 MIR4298-201ENST00000584380 73 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC090617.7-201ENST00000623952 126 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AC073476.4-201ENST00000628409 72 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 ZNF849P-201ENST00000594711 1566 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AP003122.5-201ENST00000527668 3766 ntBASIC3.21□□□□□ -1.9
TM9SF3Q9HD45 AL513185.3-201ENST00000433335 1300 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 SNORA80A-201ENST00000363922 136 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 U3.11-201ENST00000364476 212 ntBASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TM9SF3Q9HD45 SNORA51.6-201ENST00000384151 125 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms