Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AC005294.1-201ENST00000355509 281 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RNU6-600P-201ENST00000362524 99 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RNU6-288P-201ENST00000363690 104 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RNU6-82P-201ENST00000363970 107 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 SNORD96B-201ENST00000386148 79 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RN7SKP32-201ENST00000410167 303 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RPL21P50-201ENST00000417698 477 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RPL35AP31-201ENST00000418340 337 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 EIF4A1P7-201ENST00000421800 1220 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AL590383.1-201ENST00000428602 75 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AF228730.2-201ENST00000438784 848 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 RN7SL517P-201ENST00000462240 305 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC015524.1-201ENST00000491585 472 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 SNRPCP11-201ENST00000492453 205 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.654-201ENST00000497848 106 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC090281.1-201ENST00000523019 276 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ATP5F1P5-201ENST00000526403 760 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC087241.2-201ENST00000535801 324 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PSMA3P-201ENST00000555485 635 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC106782.4-201ENST00000568264 210 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC022893.3-201ENST00000607665 437 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AL139099.4-201ENST00000614802 114 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AL359314.1-201ENST00000616913 261 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AC009248.2-201ENST00000619826 254 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 C2orf27A-204ENST00000623058 969 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PABPC1P6-201ENST00000445594 1829 ntBASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.23□□□□□ -1.73
CLRN3Q8NCR9 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 FANCD2P2-201ENST00000437591 1400 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC107068.1-201ENST00000563286 4218 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 RNA5SP52-201ENST00000362448 134 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.142-201ENST00000363491 102 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 CISD1P1-201ENST00000393907 327 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 HSPE1P8-201ENST00000406997 288 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 Y_RNA.615-201ENST00000410769 117 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 RN7SKP144-201ENST00000411108 279 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 RNU2-71P-201ENST00000411395 189 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 BMS1P17-202ENST00000416720 316 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 Z82198.3-201ENST00000421145 199 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AL365400.1-201ENST00000431854 640 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 VDAC1P3-201ENST00000434069 851 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 Z80107.2-201ENST00000445127 392 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC007383.1-201ENST00000445875 636 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AL590639.1-201ENST00000456484 337 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC116533.1-201ENST00000459748 321 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC004801.2-202ENST00000463559 283 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AP000926.1-201ENST00000479573 241 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 RN7SL612P-201ENST00000497704 295 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 MRPS5P3-201ENST00000515577 166 ntBASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.22□□□□□ -1.73
CLRN3Q8NCR9 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms