Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 RPL36AP41-201ENST00000493820 306 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 RN7SKP46-201ENST00000515942 234 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 HIGD1AP6-201ENST00000521833 279 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 OR5B19P-201ENST00000531766 928 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.67□□□□□ -1.66
USP39Q53GS9 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AC034105.3-201ENST00000565294 442 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 IPO5P1-202ENST00000600039 287 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 VN1R85P-201ENST00000601587 426 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 ARF4P1-201ENST00000605447 541 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AP001521.1-201ENST00000609150 300 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 AC114781.5-201ENST00000615297 108 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.67□□□□□ -1.66
USP39Q53GS9 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 OFD1P5Y-201ENST00000447585 2590 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 NMD3P1-201ENST00000439704 1488 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 MTND5P3-201ENST00000438536 1800 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
USP39Q53GS9 ASNSP1-204ENST00000641977 1664 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.67□□□□□ -1.66
USP39Q53GS9 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
USP39Q53GS9 MTCO1P9-201ENST00000505577 1534 ntBASIC4.67□□□□□ -1.66
USP39Q53GS9 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.66□□□□□ -1.66
USP39Q53GS9 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP39Q53GS9 Y_RNA.157-201ENST00000363638 102 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 RNU1-85P-201ENST00000364127 164 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 RNU1-64P-201ENST00000365443 163 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 SNORA48.7-201ENST00000391302 135 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
USP39Q53GS9 MIR1305-201ENST00000408300 86 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC011933.1-201ENST00000413334 321 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 E2F6P2-201ENST00000420708 748 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 RPL7AP25-201ENST00000423357 805 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AL365400.1-201ENST00000431854 640 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.66□□□□□ -1.66
USP39Q53GS9 SEPT14P3-201ENST00000439401 183 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AL732372.2-207ENST00000445840 183 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 SEPT14P2-201ENST00000453405 183 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC116533.1-201ENST00000459748 321 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC090142.1-201ENST00000465776 462 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 RPL21P126-201ENST00000470049 478 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC083798.1-201ENST00000472671 131 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.66□□□□□ -1.66
USP39Q53GS9 RN7SL810P-201ENST00000493031 276 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.66□□□□□ -1.66
USP39Q53GS9 SEPT14P4-201ENST00000513445 186 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 SNORA19.2-201ENST00000516013 114 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 RNU6-1003P-201ENST00000517099 105 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 FO082796.1-201ENST00000523795 183 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 PHBP17-201ENST00000528576 541 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC093249.4-201ENST00000564755 259 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 MIR4512-201ENST00000583257 77 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC007390.2-201ENST00000606229 3803 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AL603758.1-201ENST00000618654 241 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.66□□□□□ -1.66
USP39Q53GS9 AC024940.5-201ENST00000622889 474 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP39Q53GS9 CKAP2P1-201ENST00000555477 2049 ntBASIC4.66□□□□□ -1.66
USP39Q53GS9 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP39Q53GS9 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.66□□□□□ -1.66
USP39Q53GS9 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
USP39Q53GS9 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
USP39Q53GS9 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4.66□□□□□ -1.66
USP39Q53GS9 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.66□□□□□ -1.66
USP39Q53GS9 RNF6P1-201ENST00000444889 1784 ntBASIC4.65□□□□□ -1.66
USP39Q53GS9 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
USP39Q53GS9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP39Q53GS9 AL672167.1-205ENST00000641112 3080 ntBASIC4.65□□□□□ -1.66
USP39Q53GS9 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP39Q53GS9 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.65□□□□□ -1.66
USP39Q53GS9 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
USP39Q53GS9 AL359922.3-201ENST00000624779 1670 ntBASIC4.65□□□□□ -1.66
USP39Q53GS9 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.65□□□□□ -1.67
USP39Q53GS9 RPS26P8-201ENST00000393490 348 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 AC068050.1-201ENST00000394891 380 ntBASIC4.65□□□□□ -1.67
USP39Q53GS9 SDHCP2-201ENST00000398565 501 ntBASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms