Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
COL4A4P53420 AC108210.2-201ENST00000503681 201 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
COL4A4P53420 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC2.94□□□□□ -1.94
COL4A4P53420 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL4A4P53420 SNORA19.3-201ENST00000516165 130 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 NRON-201ENST00000517270 370 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
COL4A4P53420 OR11H5P-201ENST00000554039 926 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 AL355836.1-201ENST00000555951 870 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 SNORD53-201ENST00000579969 78 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC2.94□□□□□ -1.94
COL4A4P53420 AC090115.4-201ENST00000609970 188 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 AP005229.2-201ENST00000609980 697 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.94□□□□□ -1.94
COL4A4P53420 AC009501.3-201ENST00000605001 1352 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 GTF2H2B-203ENST00000508065 1432 ntBASIC2.94□□□□□ -1.94
COL4A4P53420 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 AC008264.2-201ENST00000610193 3731 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 DDX18P3-201ENST00000404856 2007 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
COL4A4P53420 RNU6-40P-201ENST00000384254 107 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MIR512-1-201ENST00000384913 84 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MIR592-201ENST00000384959 97 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 RNU6-298P-201ENST00000390888 96 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL121978.1-201ENST00000402778 359 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL590004.2-201ENST00000404787 371 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL355379.1-201ENST00000405542 640 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MTCO1P21-201ENST00000416634 589 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL390023.1-201ENST00000428836 262 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 NAP1L4P3-201ENST00000432820 1147 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MTND1P4-201ENST00000435196 415 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL513043.1-201ENST00000439124 535 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL031667.1-201ENST00000440222 725 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MTCO2P7-201ENST00000446518 666 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 HMGB1P26-201ENST00000452520 628 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AC078785.3-201ENST00000476607 425 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AC093663.2-201ENST00000484625 313 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AC091163.3-201ENST00000518269 1144 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 MTND4LP18-201ENST00000526864 291 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AP003717.3-201ENST00000544832 1180 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 ZNF321P-202ENST00000550843 495 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.93□□□□□ -1.94
COL4A4P53420 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC2.93□□□□□ -1.94
COL4A4P53420 MTCYBP23-201ENST00000558717 1102 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.93□□□□□ -1.94
COL4A4P53420 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.93□□□□□ -1.94
COL4A4P53420 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.93□□□□□ -1.94
COL4A4P53420 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 AC004987.4-201ENST00000603383 338 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL160237.3-201ENST00000604114 1013 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL392112.1-201ENST00000605115 829 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC2.93□□□□□ -1.94
COL4A4P53420 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 AL590410.1-201ENST00000617925 333 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL512427.1-201ENST00000618593 349 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL121895.2-201ENST00000619558 447 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 AL603839.4-201ENST00000624658 1005 ntBASIC2.93□□□□□ -1.94
COL4A4P53420 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC2.93□□□□□ -1.94
COL4A4P53420 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC2.93□□□□□ -1.94
COL4A4P53420 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
COL4A4P53420 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
COL4A4P53420 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 SFR1P1-201ENST00000403720 688 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RPL5P19-201ENST00000404228 893 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 AC010153.1-201ENST00000432862 727 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 MTCYBP39-201ENST00000437562 491 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.92□□□□□ -1.94
COL4A4P53420 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 MTND4LP3-201ENST00000468320 276 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RPL36AP21-201ENST00000490372 323 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 AC091860.1-201ENST00000505723 432 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 GOLGA5P1-201ENST00000507317 980 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RNU6-491P-201ENST00000516099 110 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AP003122.3-201ENST00000526316 255 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 RFPL1S-203ENST00000539579 330 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC2.92□□□□□ -1.94
COL4A4P53420 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AGGF1P8-201ENST00000562979 1000 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC2.92□□□□□ -1.94
COL4A4P53420 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC2.92□□□□□ -1.94
COL4A4P53420 AC241377.1-201ENST00000619797 406 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AL157770.1-201ENST00000623049 439 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AP003400.5-201ENST00000624827 617 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
COL4A4P53420 AC007671.2-201ENST00000637344 619 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 AC006927.3-201ENST00000638789 384 ntBASIC2.92□□□□□ -1.94
COL4A4P53420 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms