Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.02□□□□□ -1.93
BRCA1P38398 AC090071.1-201ENST00000507713 644 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 USP9YP5-201ENST00000511770 630 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.02□□□□□ -1.93
BRCA1P38398 OR5D17P-201ENST00000531492 978 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
BRCA1P38398 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC3.02□□□□□ -1.93
BRCA1P38398 AC128657.1-201ENST00000549459 145 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
BRCA1P38398 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
BRCA1P38398 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC3.02□□□□□ -1.93
BRCA1P38398 AL020991.1-201ENST00000612314 373 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 STMN1P1-201ENST00000617809 440 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 MTND5P19-201ENST00000424872 1794 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.02□□□□□ -1.93
BRCA1P38398 ZNF33BP1-201ENST00000452497 1834 ntBASIC3.02□□□□□ -1.93
BRCA1P38398 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.02□□□□□ -1.93
BRCA1P38398 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 BTBD10P2-201ENST00000404779 676 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 RNU2-71P-201ENST00000411395 189 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 OR51AB1P-201ENST00000429046 620 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
BRCA1P38398 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 AL513343.1-201ENST00000451818 792 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.01□□□□□ -1.93
BRCA1P38398 AP004217.1-201ENST00000480579 346 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 AP000942.3-201ENST00000603702 160 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 AC103710.2-201ENST00000609912 942 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 AC104820.1-201ENST00000624183 307 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.01□□□□□ -1.93
BRCA1P38398 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.01□□□□□ -1.93
BRCA1P38398 AC009487.4-201ENST00000624969 3585 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.01□□□□□ -1.93
BRCA1P38398 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.01□□□□□ -1.93
BRCA1P38398 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
BRCA1P38398 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 RNU1-100P-201ENST00000365255 165 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
BRCA1P38398 MIR525-201ENST00000384978 85 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 SNORA17.3-201ENST00000391159 129 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 HMGB1P10-201ENST00000395823 563 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
BRCA1P38398 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC3.01□□□□□ -1.93
BRCA1P38398 RN7SKP210-201ENST00000459176 261 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 AC096992.1-201ENST00000459808 709 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 RPL23AP45-201ENST00000476406 468 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.01□□□□□ -1.93
BRCA1P38398 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.01□□□□□ -1.93
BRCA1P38398 AC104115.2-201ENST00000523026 687 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 OR5BN1P-201ENST00000532955 829 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 RPL23AP84-201ENST00000571193 464 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 AC006254.3-201ENST00000603353 884 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 FRG1DP-201ENST00000635586 771 ntBASIC3.01□□□□□ -1.93
BRCA1P38398 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3□□□□□ -1.93
BRCA1P38398 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3□□□□□ -1.93
BRCA1P38398 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
BRCA1P38398 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3□□□□□ -1.93
BRCA1P38398 MAPK10-322ENST00000641485 4530 ntBASIC3□□□□□ -1.93
BRCA1P38398 RNA5SP391-201ENST00000363456 119 ntBASIC3□□□□□ -1.93
BRCA1P38398 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC3□□□□□ -1.93
BRCA1P38398 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
BRCA1P38398 OFD1P1Y-201ENST00000411756 1225 ntBASIC3□□□□□ -1.93
BRCA1P38398 AC114878.1-201ENST00000441166 358 ntBASIC3□□□□□ -1.93
BRCA1P38398 AL513321.1-201ENST00000441175 761 ntBASIC3□□□□□ -1.93
BRCA1P38398 AL590399.6-201ENST00000446396 307 ntBASIC3□□□□□ -1.93
BRCA1P38398 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3□□□□□ -1.93
BRCA1P38398 RPL21P18-201ENST00000469899 480 ntBASIC3□□□□□ -1.93
BRCA1P38398 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC3□□□□□ -1.93
BRCA1P38398 NDUFB4P9-201ENST00000511646 388 ntBASIC3□□□□□ -1.93
BRCA1P38398 RNU6-548P-201ENST00000517083 115 ntBASIC3□□□□□ -1.93
BRCA1P38398 TRAV11-201ENST00000539512 339 ntBASIC3□□□□□ -1.93
BRCA1P38398 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC3□□□□□ -1.93
BRCA1P38398 AL731537.2-201ENST00000561565 951 ntBASIC3□□□□□ -1.93
BRCA1P38398 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3□□□□□ -1.93
BRCA1P38398 KATNBL1P1-201ENST00000605192 748 ntBASIC3□□□□□ -1.93
BRCA1P38398 AC004775.1-201ENST00000607389 753 ntBASIC3□□□□□ -1.93
BRCA1P38398 AL136981.2-201ENST00000617319 734 ntBASIC3□□□□□ -1.93
BRCA1P38398 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3□□□□□ -1.93
BRCA1P38398 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3□□□□□ -1.93
BRCA1P38398 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
BRCA1P38398 MIR181A2-201ENST00000384863 110 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 AC009969.1-201ENST00000438726 172 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 RPS27P5-201ENST00000444247 244 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC2.99□□□□□ -1.93
BRCA1P38398 AC106872.3-201ENST00000495104 446 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.99□□□□□ -1.93
BRCA1P38398 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC2.99□□□□□ -1.93
BRCA1P38398 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
BRCA1P38398 CKS1BP1-201ENST00000555221 240 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 AL009028.1-201ENST00000604895 802 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 AC103710.3-201ENST00000608157 948 ntBASIC2.99□□□□□ -1.93
BRCA1P38398 AL450489.1-201ENST00000612071 468 ntBASIC2.99□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms