Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC123768.4-201ENST00000616244 701 ntBASIC5.49□□□□□ -1.53
MSX1P28360 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 AC093849.1-201ENST00000563631 2209 ntBASIC5.49□□□□□ -1.53
MSX1P28360 AC005225.5-201ENST00000623547 2225 ntBASIC5.49□□□□□ -1.53
MSX1P28360 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.49□□□□□ -1.53
MSX1P28360 AC027287.1-201ENST00000553115 1453 ntBASIC5.49□□□□□ -1.53
MSX1P28360 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.49□□□□□ -1.53
MSX1P28360 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.49□□□□□ -1.53
MSX1P28360 VCAM1-201ENST00000294728 3083 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
MSX1P28360 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 AC007529.1-201ENST00000418574 2178 ntBASIC5.48□□□□□ -1.53
MSX1P28360 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 AL391987.6-201ENST00000305671 199 ntBASIC5.48□□□□□ -1.53
MSX1P28360 Y_RNA.65-201ENST00000362846 100 ntBASIC5.48□□□□□ -1.53
MSX1P28360 Y_RNA.237-201ENST00000364439 102 ntBASIC5.48□□□□□ -1.53
MSX1P28360 RNU2-33P-201ENST00000410344 192 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AL030996.1-201ENST00000411430 235 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AL160275.3-201ENST00000423876 471 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AC096920.1-201ENST00000423991 241 ntBASIC5.48□□□□□ -1.53
MSX1P28360 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 PTMAP6-201ENST00000439110 327 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 RPL37P6-201ENST00000460682 294 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AC098869.1-201ENST00000481627 292 ntBASIC5.48□□□□□ -1.53
MSX1P28360 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 ACA59.1-201ENST00000515966 143 ntBASIC5.48□□□□□ -1.53
MSX1P28360 SCARNA18.1-201ENST00000516330 83 ntBASIC5.48□□□□□ -1.53
MSX1P28360 RNU6-911P-201ENST00000516523 104 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 AC090022.1-201ENST00000546569 311 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 MIR132-201ENST00000591554 101 ntBASIC5.48□□□□□ -1.53
MSX1P28360 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.48□□□□□ -1.53
MSX1P28360 AL136131.3-201ENST00000607600 188 ntBASIC5.48□□□□□ -1.53
MSX1P28360 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 AC092070.2-203ENST00000598377 3644 ntBASIC5.48□□□□□ -1.53
MSX1P28360 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 AC140134.1-201ENST00000511830 3544 ntBASIC5.48□□□□□ -1.53
MSX1P28360 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 LRRC37B-204ENST00000543378 3091 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
MSX1P28360 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
MSX1P28360 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
MSX1P28360 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.47□□□□□ -1.53
MSX1P28360 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 RNA5SP240-201ENST00000365355 128 ntBASIC5.47□□□□□ -1.53
MSX1P28360 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 RNU6-125P-201ENST00000384505 107 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AL590704.1-201ENST00000402856 794 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AL139156.1-201ENST00000412785 841 ntBASIC5.47□□□□□ -1.53
MSX1P28360 EI24P4-201ENST00000423683 1078 ntBASIC5.47□□□□□ -1.53
MSX1P28360 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.47□□□□□ -1.53
MSX1P28360 RPEP5-201ENST00000441137 268 ntBASIC5.47□□□□□ -1.53
MSX1P28360 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
MSX1P28360 EEF1A1P1-201ENST00000447052 739 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC234775.1-201ENST00000454247 670 ntBASIC5.47□□□□□ -1.53
MSX1P28360 CREM-230ENST00000474931 626 ntTSL 2 BASIC5.47□□□□□ -1.53
MSX1P28360 RN7SL717P-201ENST00000478343 297 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC006499.3-201ENST00000506077 748 ntBASIC5.47□□□□□ -1.53
MSX1P28360 NDUFB4P9-201ENST00000511646 388 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.47□□□□□ -1.53
MSX1P28360 RNA5SP438-201ENST00000516561 112 ntBASIC5.47□□□□□ -1.53
MSX1P28360 snoU109.6-201ENST00000516831 118 ntBASIC5.47□□□□□ -1.53
MSX1P28360 RNU6-352P-201ENST00000516908 107 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC5.47□□□□□ -1.53
MSX1P28360 AC091078.2-201ENST00000557145 559 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC092121.1-201ENST00000569452 202 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC004584.2-201ENST00000570407 410 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC5.47□□□□□ -1.53
MSX1P28360 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.47□□□□□ -1.53
MSX1P28360 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.47□□□□□ -1.53
MSX1P28360 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 FAM27E4-201ENST00000605259 342 ntBASIC5.47□□□□□ -1.53
MSX1P28360 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.47□□□□□ -1.53
MSX1P28360 MIR1244-1-201ENST00000612829 85 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 123.4 ms