Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC6.33□□□□□ -1.4
COL9A1P20849 MIR6809-201ENST00000612189 116 ntBASIC6.33□□□□□ -1.4
COL9A1P20849 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL9A1P20849 NLGN4X-202ENST00000381092 3750 ntAPPRIS P2 TSL 2 BASIC6.33□□□□□ -1.4
COL9A1P20849 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.33□□□□□ -1.4
COL9A1P20849 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL9A1P20849 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL9A1P20849 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL9A1P20849 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL9A1P20849 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
COL9A1P20849 AL589993.1-201ENST00000407450 2524 ntBASIC6.33□□□□□ -1.4
COL9A1P20849 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC6.33□□□□□ -1.4
COL9A1P20849 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL9A1P20849 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 AC010624.4-201ENST00000597606 1351 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL9A1P20849 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL9A1P20849 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 AL078621.3-201ENST00000623707 2042 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL9A1P20849 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 RNU6-1301P-201ENST00000362724 104 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 U8.4-201ENST00000363626 134 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 Y_RNA.261-201ENST00000364631 102 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 Y_RNA.534-201ENST00000384599 112 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 RNU6-1179P-201ENST00000384667 107 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL9A1P20849 RNU6-257P-201ENST00000410238 98 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AC016712.1-201ENST00000431088 378 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AC005002.2-201ENST00000438228 269 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 TDGF1P1-201ENST00000445734 527 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AL354710.1-201ENST00000453641 246 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.32□□□□□ -1.4
COL9A1P20849 AC083982.1-201ENST00000485679 344 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 RN7SL547P-201ENST00000490793 290 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC6.32□□□□□ -1.4
COL9A1P20849 MRPS33P2-201ENST00000507850 322 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 MIR892C-201ENST00000516410 77 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 SNORA27.4-201ENST00000516650 95 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 RN7SKP98-201ENST00000517070 156 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC6.32□□□□□ -1.4
COL9A1P20849 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 MIR8089-201ENST00000620165 82 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AC091953.3-201ENST00000623220 236 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 STK31-205ENST00000433467 3085 ntTSL 2 BASIC6.32□□□□□ -1.4
COL9A1P20849 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL9A1P20849 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 AC025809.2-201ENST00000625085 1802 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
COL9A1P20849 RAD17P1-201ENST00000418130 2042 ntBASIC6.32□□□□□ -1.4
COL9A1P20849 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.31□□□□□ -1.4
COL9A1P20849 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 ANO4-201ENST00000392977 3509 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
COL9A1P20849 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 RNA5SP375-201ENST00000362975 119 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 Y_RNA.127-201ENST00000363386 109 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RNU1-49P-201ENST00000363468 159 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 RNU6-1289P-201ENST00000384431 106 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AC116036.1-201ENST00000412199 367 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AC079809.1-201ENST00000415468 276 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AL713922.1-201ENST00000416477 747 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AF186996.5-201ENST00000418098 904 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RPL30P3-201ENST00000424262 333 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RPL21P40-201ENST00000428586 483 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 U8.22-201ENST00000459141 133 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 HMGB1P25-201ENST00000468402 607 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RPS4XP1-201ENST00000482189 787 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AC072052.1-201ENST00000496556 306 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AC106800.3-201ENST00000511389 308 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 RNU6-426P-201ENST00000516464 97 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 Y_RNA.710-201ENST00000516975 110 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 FAM25E-202ENST00000608562 189 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 AC083809.1-201ENST00000615051 472 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 MIR7159-201ENST00000620587 66 ntBASIC6.31□□□□□ -1.4
COL9A1P20849 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.31□□□□□ -1.4
COL9A1P20849 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.31□□□□□ -1.4
COL9A1P20849 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL9A1P20849 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms