Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC011939.3-201ENST00000613686 466 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AL391261.4-201ENST00000616012 481 ntBASIC3.64□□□□□ -1.83
MSH3P20585 MIR7844-201ENST00000616161 122 ntBASIC3.64□□□□□ -1.83
MSH3P20585 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.64□□□□□ -1.83
MSH3P20585 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.64□□□□□ -1.83
MSH3P20585 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 USP8P1-201ENST00000494673 3183 ntBASIC3.64□□□□□ -1.83
MSH3P20585 SAGE4P-201ENST00000442271 3381 ntBASIC3.64□□□□□ -1.83
MSH3P20585 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.64□□□□□ -1.83
MSH3P20585 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.64□□□□□ -1.83
MSH3P20585 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
MSH3P20585 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
MSH3P20585 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
MSH3P20585 Y_RNA.51-201ENST00000362725 102 ntBASIC3.63□□□□□ -1.83
MSH3P20585 Y_RNA.201-201ENST00000364052 96 ntBASIC3.63□□□□□ -1.83
MSH3P20585 RNU6-660P-201ENST00000364566 109 ntBASIC3.63□□□□□ -1.83
MSH3P20585 SNORD3H-201ENST00000384486 214 ntBASIC3.63□□□□□ -1.83
MSH3P20585 MIR134-201ENST00000385258 73 ntBASIC3.63□□□□□ -1.83
MSH3P20585 SNORA26.8-201ENST00000391306 124 ntBASIC3.63□□□□□ -1.83
MSH3P20585 RPL7P60-201ENST00000397636 735 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL391417.1-201ENST00000404100 426 ntBASIC3.63□□□□□ -1.83
MSH3P20585 RPL7P8-201ENST00000411964 730 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.63□□□□□ -1.83
MSH3P20585 AL035423.1-201ENST00000420331 213 ntBASIC3.63□□□□□ -1.83
MSH3P20585 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC3.63□□□□□ -1.83
MSH3P20585 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 UBE2FP3-201ENST00000436366 524 ntBASIC3.63□□□□□ -1.83
MSH3P20585 MTCO2P16-201ENST00000436962 677 ntBASIC3.63□□□□□ -1.83
MSH3P20585 THAP5P1-201ENST00000439089 262 ntBASIC3.63□□□□□ -1.83
MSH3P20585 RPL23AP33-201ENST00000442301 452 ntBASIC3.63□□□□□ -1.83
MSH3P20585 CDC27P1-201ENST00000445384 715 ntBASIC3.63□□□□□ -1.83
MSH3P20585 TAF9P1-201ENST00000445421 515 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 TAF9P2-201ENST00000454958 515 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL136097.1-201ENST00000456945 913 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC026410.2-201ENST00000460281 156 ntBASIC3.63□□□□□ -1.83
MSH3P20585 RN7SL542P-201ENST00000467147 294 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL136126.1-201ENST00000473603 402 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC109486.1-201ENST00000486833 374 ntBASIC3.63□□□□□ -1.83
MSH3P20585 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.63□□□□□ -1.83
MSH3P20585 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 RNF138P1-201ENST00000502765 546 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC3.63□□□□□ -1.83
MSH3P20585 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.63□□□□□ -1.83
MSH3P20585 RNU4-60P-201ENST00000517239 135 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.63□□□□□ -1.83
MSH3P20585 HIGD1AP10-201ENST00000527837 282 ntBASIC3.63□□□□□ -1.83
MSH3P20585 MED28P5-201ENST00000528254 438 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC3.63□□□□□ -1.83
MSH3P20585 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.63□□□□□ -1.83
MSH3P20585 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.63□□□□□ -1.83
MSH3P20585 AL121576.1-201ENST00000556055 276 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.63□□□□□ -1.83
MSH3P20585 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC3.63□□□□□ -1.83
MSH3P20585 AC006130.2-201ENST00000586202 326 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.63□□□□□ -1.83
MSH3P20585 AC011518.1-202ENST00000592668 407 ntTSL 5 BASIC3.63□□□□□ -1.83
MSH3P20585 KLKP1-201ENST00000595979 403 ntBASIC3.63□□□□□ -1.83
MSH3P20585 AL121772.2-201ENST00000614331 297 ntBASIC3.63□□□□□ -1.83
MSH3P20585 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.63□□□□□ -1.83
MSH3P20585 AC006927.3-201ENST00000638789 384 ntBASIC3.63□□□□□ -1.83
MSH3P20585 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
MSH3P20585 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
MSH3P20585 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AP002907.1-201ENST00000606361 1430 ntBASIC3.62□□□□□ -1.83
MSH3P20585 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH3P20585 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH3P20585 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AL672167.1-206ENST00000356293 943 ntBASIC3.62□□□□□ -1.83
MSH3P20585 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
MSH3P20585 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AL359837.1-201ENST00000381357 287 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RNU6-723P-201ENST00000383973 107 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AC007066.1-201ENST00000392902 381 ntBASIC3.62□□□□□ -1.83
MSH3P20585 BTF3L4P1-201ENST00000413813 468 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RPL31P2-201ENST00000413849 377 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 AC006989.1-201ENST00000427212 131 ntBASIC3.62□□□□□ -1.83
MSH3P20585 CKS1BP5-201ENST00000434172 273 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.62□□□□□ -1.83
MSH3P20585 RPS3AP46-201ENST00000448352 682 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 KATNBL1P6-201ENST00000453433 915 ntBASIC3.62□□□□□ -1.83
MSH3P20585 ZNF114P1-201ENST00000453500 292 ntBASIC3.62□□□□□ -1.83
MSH3P20585 TPTE2P5-203ENST00000458118 728 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RPL7P15-201ENST00000461190 712 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RPL23AP62-201ENST00000463396 453 ntBASIC3.62□□□□□ -1.83
MSH3P20585 RPL30P9-201ENST00000465586 330 ntBASIC3.62□□□□□ -1.83
MSH3P20585 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.62□□□□□ -1.83
MSH3P20585 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC3.62□□□□□ -1.83
MSH3P20585 AL024509.2-201ENST00000493462 493 ntBASIC3.62□□□□□ -1.83
MSH3P20585 TMEM251P1-201ENST00000503717 318 ntBASIC3.62□□□□□ -1.83
MSH3P20585 AC091435.1-201ENST00000505442 584 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms