Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC4.54□□□□□ -1.68
COL3A1P02461 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 AC044792.1-201ENST00000593294 196 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.54□□□□□ -1.68
COL3A1P02461 AP000907.4-201ENST00000604143 237 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC090578.1-201ENST00000604955 591 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC009994.1-201ENST00000606889 253 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.54□□□□□ -1.68
COL3A1P02461 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC4.54□□□□□ -1.68
COL3A1P02461 AL157786.1-207ENST00000627771 695 ntBASIC4.54□□□□□ -1.68
COL3A1P02461 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
COL3A1P02461 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
COL3A1P02461 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.53□□□□□ -1.68
COL3A1P02461 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL3A1P02461 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL3A1P02461 OR10J6P-201ENST00000289731 930 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 Y_RNA.18-201ENST00000362461 102 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 RNU4-12P-201ENST00000365233 139 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 RNU5A-6P-201ENST00000384136 116 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AL136116.1-201ENST00000403591 381 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 MIR1277-201ENST00000408536 78 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC002524.1-201ENST00000411687 547 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.53□□□□□ -1.68
COL3A1P02461 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 BOLA3P4-201ENST00000418151 400 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 OFD1P2Y-201ENST00000421895 1149 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC4.53□□□□□ -1.68
COL3A1P02461 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 RPL23AP82-202ENST00000427528 469 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC4.53□□□□□ -1.68
COL3A1P02461 HMGB3P9-201ENST00000441799 583 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 RPL23AP76-201ENST00000441860 458 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 COX6CP12-201ENST00000446748 202 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 MTCO2P25-201ENST00000447065 681 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 NANOGNBP1-201ENST00000448444 480 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 CDC42P1-201ENST00000456658 548 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 CENPBD1P1-201ENST00000464061 469 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC4.53□□□□□ -1.68
COL3A1P02461 RPS3AP17-201ENST00000472594 777 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC021205.2-201ENST00000480069 347 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 RPL7P38-201ENST00000488396 739 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC008628.2-201ENST00000502605 298 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC4.53□□□□□ -1.68
COL3A1P02461 OR5AL2P-201ENST00000532185 920 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.53□□□□□ -1.68
COL3A1P02461 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 AL365503.1-201ENST00000605247 905 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 MIR8058-201ENST00000615737 89 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 AC087821.2-201ENST00000637086 450 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 AC099063.3-201ENST00000642066 185 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL3A1P02461 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.53□□□□□ -1.68
COL3A1P02461 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.53□□□□□ -1.68
COL3A1P02461 AF117829.1-206ENST00000621883 3802 ntBASIC4.53□□□□□ -1.68
COL3A1P02461 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
COL3A1P02461 AL513302.2-201ENST00000562313 1842 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC4.52□□□□□ -1.69
COL3A1P02461 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL3A1P02461 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL3A1P02461 RNU6-31P-201ENST00000384388 108 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL357075.1-201ENST00000404107 726 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL590002.1-201ENST00000406554 418 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 HMGB3P31-201ENST00000413333 595 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
COL3A1P02461 AC063979.1-201ENST00000415539 377 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.52□□□□□ -1.69
COL3A1P02461 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.52□□□□□ -1.69
COL3A1P02461 AL139413.1-201ENST00000421309 217 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.52□□□□□ -1.69
COL3A1P02461 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC4.52□□□□□ -1.69
COL3A1P02461 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.52□□□□□ -1.69
COL3A1P02461 CYCSP32-201ENST00000440548 321 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 EIF4A1P11-201ENST00000451239 222 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL035407.2-201ENST00000454090 378 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC4.52□□□□□ -1.69
COL3A1P02461 HMGB1P21-201ENST00000502313 581 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC4.52□□□□□ -1.69
COL3A1P02461 FCF1P8-201ENST00000510322 597 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.52□□□□□ -1.69
COL3A1P02461 SNORA31.13-201ENST00000516624 135 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 SCARNA20.6-201ENST00000517251 106 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.52□□□□□ -1.69
COL3A1P02461 RAB11AP2-201ENST00000545905 639 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.52□□□□□ -1.69
COL3A1P02461 AC106782.4-201ENST00000568264 210 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC103881.1-201ENST00000603476 538 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AC015871.2-201ENST00000603605 948 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 AL592494.3-201ENST00000609485 464 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 PART1_1.1-201ENST00000611761 217 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 MIR7112-201ENST00000616126 65 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 CR381653.2-201ENST00000624041 768 ntBASIC4.52□□□□□ -1.69
COL3A1P02461 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
COL3A1P02461 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.8 ms