Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 HSPE1P20-201ENST00000538133 289 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 MIR15A-201ENST00000607334 83 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AL161616.1-201ENST00000611867 286 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC139769.1-204ENST00000472297 1931 ntBASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
LIMD1Q9UGP4 AC092692.1-201ENST00000623625 2595 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AC068769.1-201ENST00000474767 2426 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.214-201ENST00000364201 112 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 RNU6-1303P-201ENST00000364841 107 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.562-201ENST00000384695 113 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MT-TW-201ENST00000387382 68 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AL445529.1-201ENST00000398713 389 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 RNA5SP251-201ENST00000410614 137 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AL030996.1-201ENST00000411430 235 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MRPL53P1-201ENST00000414323 319 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 PRDX3P3-201ENST00000447765 522 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 FCF1P4-201ENST00000448326 183 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 RN7SL165P-201ENST00000477476 291 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MRPS33P2-201ENST00000507850 322 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 Y_RNA.680-201ENST00000516441 93 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 HMGN2P36-201ENST00000529541 409 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AL049872.1-201ENST00000556323 322 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AC006600.1-201ENST00000572529 153 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 RNU4ATAC-201ENST00000580972 127 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 HMGB1P50-201ENST00000605814 607 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MIR6748-201ENST00000610433 71 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MIR7155-201ENST00000615925 56 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 CU639417.4-201ENST00000623928 207 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 THAP12P5-201ENST00000405864 2275 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AL731532.1-201ENST00000623972 4236 ntBASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 CAMSAP2-201ENST00000236925 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 CARF-208ENST00000428585 2513 ntTSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
LIMD1Q9UGP4 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AC068870.1-201ENST00000563737 2455 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 RNY1P16-201ENST00000363063 111 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 RNU6-178P-201ENST00000384631 104 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 MIR585-201ENST00000384887 94 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 RPL21P67-201ENST00000402896 478 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 HSPE1P8-201ENST00000406997 288 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 MIR1286-201ENST00000408112 78 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 MTCO3P19-201ENST00000415864 321 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AL353997.1-201ENST00000432936 108 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AL132765.1-201ENST00000434165 553 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 OR2AO1P-201ENST00000476497 403 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 RN7SL826P-201ENST00000479724 288 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AC073916.1-201ENST00000545095 130 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 FKBP1AP1-201ENST00000594588 318 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 BDH2P1-201ENST00000602288 736 ntBASIC6.18□□□□□ -1.42
LIMD1Q9UGP4 U73479.1-201ENST00000618062 168 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms