Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 OR11H5P-202ENST00000641612 1325 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 IGKV7-3-201ENST00000357453 298 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.112-201ENST00000363250 102 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.257-201ENST00000364596 102 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RNA5SP428-201ENST00000365129 132 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL583835.1-201ENST00000399570 407 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 MRPL42P2-201ENST00000403169 426 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL591416.1-201ENST00000404015 867 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL121834.1-202ENST00000404494 277 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.615-201ENST00000410769 117 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC092634.6-201ENST00000418558 192 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RGS17P1-201ENST00000423358 553 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 TRAPPC2P5-201ENST00000426293 308 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RBMY2QP-201ENST00000429799 1147 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RN7SL517P-201ENST00000462240 305 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RN7SL319P-201ENST00000480656 221 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC025164.1-201ENST00000496249 478 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 MTCO1P29-201ENST00000496868 288 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC025674.1-201ENST00000507074 324 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 MRPS35P2-201ENST00000508242 191 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC004980.4-201ENST00000513375 203 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RNA5SP360-201ENST00000516555 118 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC104986.1-201ENST00000517978 436 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 HMGB1P23-201ENST00000518743 568 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AP002404.1-201ENST00000532005 451 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 BNIP3P6-201ENST00000549284 499 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 POLR2KP1-201ENST00000553226 168 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 HMGB1P6-201ENST00000569046 646 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC093799.2-201ENST00000610062 578 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 uc_338.15-201ENST00000615470 191 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 SNX18P1Y-201ENST00000616231 511 ntBASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CCDC39Q9UFE4 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RNU5E-1-201ENST00000362477 120 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.158-201ENST00000363651 101 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RN7SKP269-201ENST00000365545 319 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 SNORD3H-201ENST00000384486 214 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 MIR1303-201ENST00000408625 86 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RN7SKP229-201ENST00000410465 302 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RNU2-50P-201ENST00000410494 143 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC073264.1-201ENST00000411508 416 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 HMGB3P2-201ENST00000411913 584 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 PDSS1P1-201ENST00000422953 1114 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL356276.2-201ENST00000435919 558 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL163193.1-201ENST00000444895 788 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 HMGB3P22-202ENST00000451823 572 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC006499.3-201ENST00000506077 748 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RNU6-764P-201ENST00000516396 105 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 Y_RNA.719-201ENST00000517156 106 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 RN7SKP295-201ENST00000517264 153 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC009902.1-201ENST00000519351 183 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 IGLV2-28-201ENST00000520681 304 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 OR10G5P-201ENST00000532733 358 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 UBE2L4-201ENST00000587688 464 ntBASIC5.56□□□□□ -1.52
CCDC39Q9UFE4 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms